PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G112200.5 | ||||||||
Common Name | B456_011G112200, LOC105778150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 360aa MW: 40532.2 Da PI: 6.1836 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.1 | 5.8e-11 | 74 | 109 | 4 | 39 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 +k +rr+++NReAAr+sR+RKka++++Le+ +L Gorai.011G112200.5 74 DKIQRRLAQNREAARKSRLRKKAYVQQLENSRLKLI 109 799**************************8554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.1E-7 | 71 | 153 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.726 | 73 | 115 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.6E-8 | 74 | 105 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.02E-7 | 75 | 115 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.0E-8 | 76 | 115 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 78 | 93 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 9.1E-30 | 162 | 236 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MESQFVPSRR MDIYDPIQQI GMWGESFNAN SNLHASVSMI AEMDNKISNE SETASHEMLA 60 PSNKYEQEAT KRIDKIQRRL AQNREAARKS RLRKKAYVQQ LENSRLKLIQ LEQELVQMKQ 120 QGVYMGGGLV GGNLGFSAPV KSGIAAFETE YARWMDEQSK QICGLRAALN AEISDTDLQM 180 LVETGMKHYS ELFRMKSTAA KSDVFYVMSG MWKTSAEQFF SWIGGFRPSE LLKVLLPQLD 240 SLTEQQFFEV CNLKQSCQQA EDALSQGMEK LREIVSVTVA DGQLGEGSYS SQVTTAMEKV 300 EALVSFVNQA DHIRQETLQQ MSRILTIRQT ARGLLALGEY FERLRALSSL WATCAREPA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457230.1 | 0.0 | PREDICTED: transcription factor TGA4-like | ||||
Refseq | XP_012457231.1 | 0.0 | PREDICTED: transcription factor TGA4-like | ||||
Refseq | XP_012457232.1 | 0.0 | PREDICTED: transcription factor TGA4-like | ||||
Refseq | XP_012457234.1 | 0.0 | PREDICTED: transcription factor TGA4-like | ||||
Swissprot | Q39162 | 1e-170 | TGA4_ARATH; Transcription factor TGA4 | ||||
TrEMBL | A0A0D2RKM1 | 0.0 | A0A0D2RKM1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G112200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 1e-166 | TGACG motif-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G112200.5 |
Entrez Gene | 105778150 |
Publications ? help Back to Top | |||
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