PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G112200.2
Common NameB456_011G112200, LOC105778150
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 360aa    MW: 40532.2 Da    PI: 6.1836
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G112200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.15.8e-1174109439
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                         +k +rr+++NReAAr+sR+RKka++++Le+   +L 
  Gorai.011G112200.2  74 DKIQRRLAQNREAARKSRLRKKAYVQQLENSRLKLI 109
                         799**************************8554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.1E-771153IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.72673115IPR004827Basic-leucine zipper domain
PfamPF001709.6E-874105IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.02E-775115No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-876115No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
PfamPF141449.1E-30162236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MESQFVPSRR MDIYDPIQQI GMWGESFNAN SNLHASVSMI AEMDNKISNE SETASHEMLA  60
PSNKYEQEAT KRIDKIQRRL AQNREAARKS RLRKKAYVQQ LENSRLKLIQ LEQELVQMKQ  120
QGVYMGGGLV GGNLGFSAPV KSGIAAFETE YARWMDEQSK QICGLRAALN AEISDTDLQM  180
LVETGMKHYS ELFRMKSTAA KSDVFYVMSG MWKTSAEQFF SWIGGFRPSE LLKVLLPQLD  240
SLTEQQFFEV CNLKQSCQQA EDALSQGMEK LREIVSVTVA DGQLGEGSYS SQVTTAMEKV  300
EALVSFVNQA DHIRQETLQQ MSRILTIRQT ARGLLALGEY FERLRALSSL WATCAREPA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457230.10.0PREDICTED: transcription factor TGA4-like
RefseqXP_012457231.10.0PREDICTED: transcription factor TGA4-like
RefseqXP_012457232.10.0PREDICTED: transcription factor TGA4-like
RefseqXP_012457234.10.0PREDICTED: transcription factor TGA4-like
SwissprotQ391621e-170TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A0D2RKM10.0A0A0D2RKM1_GOSRA; Uncharacterized protein
STRINGGorai.011G112200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-166TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]