PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G111100.1 | ||||||||
Common Name | B456_011G111100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 159aa MW: 18075.6 Da PI: 7.9275 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.9 | 1.5e-17 | 5 | 103 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 f kvlt+ dv k+ l +p++ ++++ +g+ +sk ++de+g +W++++ y +++g+ vl++GW++Fv +g+ +gD ++++ d Gorai.011G111100.1 5 FTKVLTNTDVEKR--LAVPNNSLKHFeleNGN--CSKSFEVKDENGSTWTFRC-YVRNDGAykkPVLSSGWRQFVLNKGVHQGDLITLYKD 90 899**99999986..9*******777864444..9999***************.54444443559************************66 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 ++e+++++ v r Gorai.011G111100.1 91 VEEEASYKIEVQR 103 6588878877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.701 | 3 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.71E-16 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-20 | 4 | 101 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-17 | 4 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.7E-8 | 5 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-14 | 5 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MQILFTKVLT NTDVEKRLAV PNNSLKHFEL ENGNCSKSFE VKDENGSTWT FRCYVRNDGA 60 YKKPVLSSGW RQFVLNKGVH QGDLITLYKD VEEEASYKIE VQRKIKLLGK ECWSSLEPDQ 120 PAGATAQVQR KILLFGKECW YFLEPEQPTD ATGKVIQA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017617728.1 | 1e-103 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
TrEMBL | A0A0D2URE9 | 1e-114 | A0A0D2URE9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G111100.1 | 1e-115 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16950 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 2e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G111100.1 |
Publications ? help Back to Top | |||
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