PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G109500.1
Common NameB456_011G109500, LOC105776557
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 491aa    MW: 54312.9 Da    PI: 7.0072
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G109500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.1e-15206265155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Gorai.011G109500.1 206 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 265
                         57*******************666664478446*************************98 PP
2AP250.74.5e-16308359155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Gorai.011G109500.1 308 SVYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 359
                         78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-12206265IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18206275IPR016177DNA-binding domain
CDDcd000183.34E-23206275No hitNo description
PROSITE profilePS5103219.44207273IPR001471AP2/ERF domain
SMARTSM003804.8E-30207279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-16207274IPR001471AP2/ERF domain
PRINTSPR003672.1E-6208219IPR001471AP2/ERF domain
PfamPF008472.8E-10308359IPR001471AP2/ERF domain
CDDcd000184.17E-11308369No hitNo description
SuperFamilySSF541717.85E-18308369IPR016177DNA-binding domain
SMARTSM003806.4E-31309373IPR001471AP2/ERF domain
PROSITE profilePS5103219.177309367IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-18309368IPR001471AP2/ERF domain
PRINTSPR003672.1E-6349369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MASASNWLSF SLSPMEMLRS SSEPQFVSYE GSPAASPHYL IDNFYANGWT NPKHQAFVQG  60
EKNQSEEAQT AASMADESPI FTSFHYQAPK LEDFLGDSSS MVRYSDSQAE TQEDSSLTQI  120
YDPSVSTYFD HHQDLNQITG FQTFSTNSGS EVDESSSRGR TQLTGVELPG HSIESSGNNT  180
TNNNKAIVSV DSDNKKIADT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQARKGRQ  240
VYLGGYDKEE KAARAYDLAA LKYWGPTATT NFPISDYSKE LEEMKHATKQ EFIASLRRKS  300
SGFSRGASVY RGVTRHHQQG RWQARIGRVA GNKDLYLGTF ATEEEAAEAY DIAAIKFRGV  360
NAVTNFEMSR YDVKAIAQSS LPIGGAAKRL KLSLESEPKP IVNQKQQPPP PRCSSNSNII  420
SFAPMKQPVS AIPCGIPFDA AAATAAFYQQ NIYQHLQTAN TSVSEPPGSS STTVMSQSAA  480
EFFLWPHRSY *
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5869995e-52JX586999.1 Gossypium hirsutum clone NBRI_GE20975 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454729.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-180AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A0D2VL400.0A0A0D2VL40_GOSRA; Uncharacterized protein
STRINGGorai.011G109500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-179AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  3. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  4. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]