PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G108400.1
Common NameB456_011G108400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 476aa    MW: 52002.9 Da    PI: 6.7166
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G108400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.81.9e-23209253145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+ep rCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e 
  Gorai.011G108400.1 209 DPEPERCRRTDGKKWRCSQDAVANQKYCERHINRGRHRSRKPVEG 253
                         79****************************************985 PP
2QLQ51.53.2e-18139175137
                 QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         ++FT++Q+ +L++Q+l+yKy+ +n+ vP++Ll +++k
  Gorai.011G108400.1 139 GPFTPSQWIELEHQALIYKYITSNVAVPSNLLNPLKK 175
                         59******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.9E-9139175IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-12140173IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.044140175IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.236209253IPR014977WRC domain
PfamPF088796.8E-20210252IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDFGVPVLDG ILGPENGAPS QPQPKLERSE DHCKCSKLQR SGDLLTPKTM PLHQPSPLLR  60
SNSLVLADTG PHEHMLCFSS LNSEVPFINI KDGDFLEIST QNSGFSYCQP TPSSYTRNAG  120
YGSGSLNASM RGGFNGVRGP FTPSQWIELE HQALIYKYIT SNVAVPSNLL NPLKKSLYPY  180
GFTSSPAGSL PPNSLGWGSF HLGYSGSTDP EPERCRRTDG KKWRCSQDAV ANQKYCERHI  240
NRGRHRSRKP VEGQTGHAAS GTTNPKVVPM SSSMSTSVIT GSGASSSLAI AQQHQFKNLQ  300
SGATHHSADA LVNRIQDPWA SSVMSSTTNL KSNNSTFMIT KQGVPFAEFS PSDFGHVAYD  360
SLVNLLHRSS IVESKEYGPY LDFTTDQETL DQNLLHQFFD DWPKDESIHS VITWPGELRS  420
DWTQLSMSIP MTSSEFSSSS SSPAQEKLAL SPLSLSREFD PIQMGSVVKN DISDF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698732.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A0D2T6250.0A0A0D2T625_GOSRA; Uncharacterized protein
STRINGGorai.011G108400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-87growth-regulating factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]