PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G104200.1

Common Name

B456_011G104200, LOC105776229

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 324aa MW: 34589.2 Da PI: 8.6525

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G104200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	58	117	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ Gorai.011G104200.1 58 HDQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKST 117 68999*****************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.8E-33	59	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	62	116	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-26	62	115	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	64	100	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MIQELLGGSS CLNFGEERKI SINGSILEGT PTSSPSPSSS SSSATTSSTT NSSNPENHDQ 60 NLRCPRCDSS NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG ALRNVPIGGG CRKNKSTTGV 120 STSLGKSTSP KMKTVVSEIG RSGFDHELQS TPILWTSAAQ TSHLLSNLTS MRATLNPNPN 180 PNTLSNPVSI KEEVSLLGSK VMNEPVVAAA ALNARLLGLD LVNPFWKNNQ HHAQQQQNNS 240 GFLVGEVQNT GIQELYQRLK SSSSSSSSSY YSDTSAVILS NVASSSSTSI LESAPVAGGE 300 LGYWNPAFSS SWSDLPTTNG AYP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964002	7e-35	JX964002.1 Gossypium hirsutum clone NBRI_TRANS-271 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454226.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBL	A0A0D2T5X7	0.0	A0A0D2T5X7_GOSRA; Uncharacterized protein
STRING	Gorai.011G104200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16000	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-34	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Gorai.011G104200.1
Entrez Gene	105776229

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]