PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G104000.1

Common Name

B456_011G104000, LOC105778571

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 236aa MW: 24390.1 Da PI: 8.5941

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G104000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	7.1e-38	26	85	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt GG+lr++PvGgg+rkn k+s Gorai.011G104000.1 26 QEQLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTLGGTLRDIPVGGGTRKNAKRS 85 6789****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-32	27	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-22	33	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MPSDSGDPNR RLTKALNSGA PPPPGQEQLP CPRCDSTNTK FCYYNNYNFS QPRHFCKSCR 60 RYWTLGGTLR DIPVGGGTRK NAKRSRTTHS TFISSSTNAG ATTTATTTSY NDFQLPATQV 120 LLPVSGNQGS SGVVGESKGN GFASLLNPQG PGFLALSGFG LGIVPALEDV GFGLGRGMWP 180 FSMGDGAVGG GGNGGAATGM GNPWQFEGAE AGPVGAGDCF SWPELAISTP GNWLK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:8718629}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457746.1	1e-171	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q39088	2e-58	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A0D2US32	1e-169	A0A0D2US32_GOSRA; Uncharacterized protein
STRING	Gorai.011G104000.1	1e-170	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	1e-38	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G104000.1
Entrez Gene	105778571

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]