PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G103800.1

Common Name

B456_011G103800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 531aa MW: 59714.9 Da PI: 8.1414

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G103800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.5	3.6e-16	154	247	10	98
HHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 10 vlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + ++ ++l +p++f + + +k+++ ++l d++g+sW k+ ++ +r + l +GW Fv++++L++gD++ F+l++ ++ ++ Gorai.011G103800.1 154 YVSHnpkhsCILGIPREFSRLF-LKQNG--NVVLCDSNGKSWAAKYATsLGSNQRpyVRLCNGWGAFVRDKNLQVGDVCAFELINCKQISF 241 3333355569******9555.55444..6***********775444444558888********************97688888 PP EEEEE- CS B3 93 vvkvfr 98 +v++f+ Gorai.011G103800.1 242 KVSIFE 247 888886 PP
2	B3	51.1	2.4e-16	298	394	2	96
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 + v +++++ +++ l+++++fa++h ++ +s+++ l ++g+sW k+ +++++ + GWk Fv++n+L+ gD++v++++++ ++ Gorai.011G103800.1 298 LVVVLRPSYIRTHALCISNHFARKHFESALTSVDVNLCLSNGKSWPAKYHQrsIGNPNGK-ICHGWKAFVNDNNLQPGDVCVLEMTNHdTK 387 55566777777788*********888899**************44444555554.556******************8754355 PP E..EEEE CS B3 90 felvvkv 96 +++v + Gorai.011G103800.1 388 ISFKVII 394 5555555 PP
3	B3	44.9	2e-14	442	525	10	96
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +lk++r ++p f+e++ ++ ++ ++ + rsW vk+ + + ++ +t+GW eF+++n L+egD++v +ld + + l+v + Gorai.011G103800.1 442 HLKEKRASIPVGFVEQYLKPD---METVILKVEDRSWPVKIASNPQNRQARFTNGWIEFARENFLREGDICVYELDALNHGLLNVCI 525 4566789********6553...4555566677***99999999***********************9866777566666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.41E-9	1	47	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.9E-11	1	53	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.377	1	40	IPR003340	B3 DNA binding domain
CDD	cd10017	2.51E-7	1	38	No hit	No description
Gene3D	G3DSA:2.40.330.10	8.7E-22	137	247	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.83E-21	140	246	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.66E-20	144	246	No hit	No description
SMART	SM01019	7.5E-12	146	249	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.915	150	249	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-13	160	247	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	5.1E-19	291	396	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.6E-21	291	397	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.79E-19	296	396	No hit	No description
Pfam	PF02362	2.4E-15	297	395	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-10	297	398	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.196	297	398	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.37E-15	427	527	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.6E-19	427	527	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.57E-16	432	527	No hit	No description
PROSITE profile	PS50863	12.731	433	529	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-9	434	529	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.9E-12	442	525	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MWLQDGWQNF AEHYSVESGH FLVFRYEGHC HFHVIIFDRT ATEIEYPDVN DNEETQKQEV 60 KIKQESEDDE PISIMNEISH GLRQKPGLQC PRPHKTMKSE TMLSGFSAGT GRGEMELTTA 120 SKVTSDEKFM VLQRVASAFQ STNPFFLVLM QPTYVSHNPK HSCILGIPRE FSRLFLKQNG 180 NVVLCDSNGK SWAAKYATSL GSNQRPYVRL CNGWGAFVRD KNLQVGDVCA FELINCKQIS 240 FKVSIFEGKK SGFHGSPPST DGYFSAKRER GTSYTQPLKA RETALEKALA FTSENPFLVV 300 VLRPSYIRTH ALCISNHFAR KHFESALTSV DVNLCLSNGK SWPAKYHQRS IGNPNGKICH 360 GWKAFVNDNN LQPGDVCVLE MTNHDTKISF KVIIFKAIAD ANSHPLEGVS QKPLGLTSQS 420 LKAATEMTST PPLFRSVVLP LHLKEKRASI PVGFVEQYLK PDMETVILKV EDRSWPVKIA 480 SNPQNRQARF TNGWIEFARE NFLREGDICV YELDALNHGL LNVCISKSDD *

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MWLQDGWQNF AEHYSVESGH FLVFRYEGHC HFHVIIFDRT ATEIEYPDVN DNEETQKQEV  60
KIKQESEDDE PISIMNEISH GLRQKPGLQC PRPHKTMKSE TMLSGFSAGT GRGEMELTTA  120
SKVTSDEKFM VLQRVASAFQ STNPFFLVLM QPTYVSHNPK HSCILGIPRE FSRLFLKQNG  180
NVVLCDSNGK SWAAKYATSL GSNQRPYVRL CNGWGAFVRD KNLQVGDVCA FELINCKQIS  240
FKVSIFEGKK SGFHGSPPST DGYFSAKRER GTSYTQPLKA RETALEKALA FTSENPFLVV  300
VLRPSYIRTH ALCISNHFAR KHFESALTSV DVNLCLSNGK SWPAKYHQRS IGNPNGKICH  360
GWKAFVNDNN LQPGDVCVLE MTNHDTKISF KVIIFKAIAD ANSHPLEGVS QKPLGLTSQS  420
LKAATEMTST PPLFRSVVLP LHLKEKRASI PVGFVEQYLK PDMETVILKV EDRSWPVKIA  480
SNPQNRQARF TNGWIEFARE NFLREGDICV YELDALNHGL LNVCISKSDD *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012453831.1	0.0	PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
TrEMBL	A0A0D2T5X5	0.0	A0A0D2T5X5_GOSRA; Uncharacterized protein
STRING	Gorai.011G103800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18343	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-23	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G103800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]