PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G086900.1 | ||||||||
Common Name | B456_011G086900, LOC105778020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 301aa MW: 31920.4 Da PI: 8.5291 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.8 | 1.2e-35 | 51 | 164 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ a++s+s+++ s + Gorai.011G086900.1 51 APKRSSNKDRHIKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaAAGASVSQQGGSL-Sagl 140 789******************************************************************99965555555554222.2245 PP TCP 89 .......................k 89 Gorai.011G086900.1 141 hqkmedlggssvgsgssrtnwgmV 164 444445555555555555555550 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.9E-30 | 56 | 269 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.28 | 57 | 111 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDPKGSKELP NFLSLPTQPQ QQLQNMGESK TAETKDVVVA DKEEGKKQQL APKRSSNKDR 60 HIKVEGRGRR IRMPALCAAR IFQLTRELGH KSDGETIQWL LQQAEPSIIA ATGSGTIPAS 120 ALAAAGASVS QQGGSLSAGL HQKMEDLGGS SVGSGSSRTN WGMVGGNLGR PPHVAAGSWP 180 PVSGYGFQSS SAPSTTNLGS EGSNYLQKIG FPGFDLTATT MGQMSFTSML GAANQQLPGL 240 ELGLSQEGHF GVLNPQALTQ IYQQMGQARV HQQQQQQNHH HHHHHHNQPS AKDDSEGSGE 300 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00384 | DAP | Transfer from AT3G27010 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457022.1 | 0.0 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 2e-82 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0D2UR16 | 0.0 | A0A0D2UR16_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G086900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4050 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-75 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G086900.1 |
Entrez Gene | 105778020 |