PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G076900.1 | ||||||||
Common Name | B456_011G076900, LOC105775789 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 401aa MW: 45702 Da PI: 4.3255 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 55.3 | 1.7e-17 | 166 | 250 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+l+L++a + + +r++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k++ + t +++s+++yf++++ Gorai.011G076900.1 166 WTEHETLVLLDAWGDCFLQCGRKSLRTEEWQEVAEKVSEIsKIERTETQCRNRLDTLKKKYKKEKAMLTE-TGGTTSKWVYFKKMD 250 *************************************775278**************************9.689999********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-21 | 165 | 252 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-4 | 166 | 231 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.191 | 166 | 223 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MDDIEDDARY PPNPFGVSYQ QGYGSSNRQK LPLRNIPSSR PIRNQYVDDD EDGEDEVEDL 60 GEEEETLNRS NGVRYVGKGM DDDNEDDDDD DEDDDLLDDD DDEDDYNEGG DDRKNVVANL 120 GRHPKKRKLK SLVSSYEFAP RVPAPAVSAP SVLKSSYGGR NSLTDWTEHE TLVLLDAWGD 180 CFLQCGRKSL RTEEWQEVAE KVSEISKIER TETQCRNRLD TLKKKYKKEK AMLTETGGTT 240 SKWVYFKKMD MLMSTPPQQG RLSCGFDSGE YVFMNPRVYL NRANGLDEMR DSPANSEFAD 300 SEEDVSDGLP PKKRRFGRQS GEDSSVKLLA DSIQKFSDIY EKIENSKRQQ MLELEKMRMD 360 FHRELEMQKR QIMERAQAEI AELQHGENEA NDASGENASG * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.732 | 0.0 | seedling |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012453753.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A0D2RIK1 | 0.0 | A0A0D2RIK1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G076900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15605 | 9 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 7e-68 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G076900.1 |
Entrez Gene | 105775789 |
Publications ? help Back to Top | |||
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