PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G074200.2 | ||||||||
Common Name | B456_011G074200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CPP | ||||||||
Protein Properties | Length: 509aa MW: 55945.3 Da PI: 7.374 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48.3 | 1.9e-15 | 196 | 233 | 2 | 39 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +++gC+Ckks+Clk+YCeCf+a+++Cs++CkC dCkN Gorai.011G074200.2 196 HERGCHCKKSECLKRYCECFQANVFCSQNCKCVDCKNF 233 889**********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 29.699 | 112 | 235 | IPR005172 | CRC domain |
SMART | SM01114 | 0.047 | 121 | 150 | IPR033467 | Tesmin/TSO1-like CXC domain |
SMART | SM01114 | 9.2E-17 | 195 | 236 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.7E-13 | 198 | 233 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MKQLEIENGD FPPKSVELVT LTSTPCYQPK RIKSVEKTSD SVKITVTERS SSHFPPKKNL 60 ARQLVFTEFG LSPIISTSSP LPVEKPGSEM HLSPRSPFSS IVVHFNAFSF QRFNLSEISH 120 AQIDRYCDCF ASGEYCNGCT CADCCNNVEN EDLRKAATEI ILERNPRAFK PKISNSPCSP 180 QDIEGDKIDS PQVGRHERGC HCKKSECLKR YCECFQANVF CSQNCKCVDC KNFEACKELI 240 TASCKEDSTS IICKNSEGCY GRIASSQMDN ASRKLYKSFK GSEGLMAITG GDCIDTKIYI 300 QRVITTTSDA TGLSGQRLSQ ESRKRKLQEL PSNEKISPSQ SFSDLQKVIS QRSSCPSSTL 360 SVGPTCHIIN SAMVGSLRDP YRLTVANVYH LLDTSKVCSG LAVLAEAAAL AQAANLFAEV 420 KDGEENKNGD ILGAKEDDYQ ERPAQVQKKA ADDFNLGFAA KDVQEGRASL PGMVGLICNE 480 KNKQLMEPTS GDQILNRNLK NAYAEQER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-21 | 126 | 234 | 25 | 122 | Protein lin-54 homolog |
5fd3_B | 6e-21 | 126 | 234 | 25 | 122 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012456975.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 6 | ||||
TrEMBL | A0A0D2UQI0 | 0.0 | A0A0D2UQI0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G074200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 8e-48 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G074200.2 |
Publications ? help Back to Top | |||
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