PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.011G067500.1 | ||||||||
Common Name | B456_011G067500, LOC105778323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 254aa MW: 27586.3 Da PI: 8.0435 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.5 | 7.9e-40 | 19 | 79 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rk k+s Gorai.011G067500.1 19 EQQQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKGTKRS 79 7899****************************************************87765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-23 | 19 | 68 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.7E-33 | 21 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.273 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 25 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MQDPMGFHQM KAPAFQEQEQ QQLKCPRCDS TNTKFCYYNN YNLSQPRHFC KNCRRYWTKG 60 GALRNIPVGG GTRKGTKRSS SSSTNNPKRQ PNPSPDPTPN QKIPDPSPPP PTSSSSSMFP 120 QQIVLSSGAQ NSDLDIDSTR MYLLPVDHQD GKMMDIGGSF SSLLASTGQF GNLLEGFNSN 180 GSGLKTLNHF GGNLDSGCEM DQSSGGDPRF GESSKNGESY LDAQGGRDTS CWSGDSNGWP 240 DLSIYTPGSS FRR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00199 | DAP | Transfer from AT1G51700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ527424 | 0.0 | HQ527424.1 Gossypium herbaceum clone NBRI_B2_1666 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457463.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.1 | ||||
Swissprot | O82155 | 8e-43 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A0D2RI21 | 0.0 | A0A0D2RI21_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G067500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1269 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21270.1 | 7e-37 | DOF zinc finger protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.011G067500.1 |
Entrez Gene | 105778323 |
Publications ? help Back to Top | |||
---|---|---|---|
|