PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G064500.1
Common NameB456_011G064500, LOC105775939
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 247aa    MW: 28321.5 Da    PI: 5.9355
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G064500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.48.9e-42141131100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaCk++rrkCa+dC+lapyfp++++++f+n+hklFG+sn++k++k+l++ e+++am+++v++++ara+dPv G++++i++lq+q+e ++
  Gorai.011G064500.1  14 ACAACKYQRRKCAPDCILAPYFPHDRQRQFQNAHKLFGVSNITKIIKNLNPPEKDIAMRTIVFQSDARANDPVGGCYRIIQELQRQIEYSQ 104
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ael+l+ ++
  Gorai.011G064500.1 105 AELDLVLHQ 113
                         ***998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.75613114IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3814110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSISRTGSNG TTQACAACKY QRRKCAPDCI LAPYFPHDRQ RQFQNAHKLF GVSNITKIIK  60
NLNPPEKDIA MRTIVFQSDA RANDPVGGCY RIIQELQRQI EYSQAELDLV LHQLAICRAQ  120
AAQQQHSDLT LGCDMINPQD PLNSYNSNYY YVQEPHEELF AVNDNNQQHQ LQENYDHSWG  180
IQESTSALST LNIKQSFMKQ SEHNDVHEDE VKHDYGIACE RHEMKFENDD IVERRFVPST  240
QLVMSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2981085105LOB family transfactor Ramosa2.1
5ly0_B3e-2981085105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453880.10.0PREDICTED: LOB domain-containing protein 22-like
SwissprotQ9LRW11e-66LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A0D2VJ030.0A0A0D2VJ03_GOSRA; Uncharacterized protein
TrEMBLA0A2P5QCU50.0A0A2P5QCU5_GOSBA; Uncharacterized protein
STRINGGorai.011G064500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64982645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-69LOB domain-containing protein 22
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]