PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G058800.1

Common Name

B456_011G058800, LOC105776896

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 322aa MW: 35521.4 Da PI: 8.9018

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G058800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.2	3.8e-25	74	118	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Gorai.011G058800.1 74 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEA 118 79****************************************986 PP
2	QLQ	57.7	3.6e-20	9	41	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 FT++Q+q+L++Q+l++Ky+++++P+Pp+Ll Gorai.011G058800.1 9 LFTPNQWQELEHQALIFKYMVSGVPIPPQLLYS 41 6*****************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.0E-10	8	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.858	9	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.5E-15	10	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.479	74	118	IPR014977	WRC domain
Pfam	PF08879	2.8E-21	75	117	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MISARNKYLF TPNQWQELEH QALIFKYMVS GVPIPPQLLY SVKTSFDSSL ASHLFPHQPT 60 GWGCFQVGFG RKPDPEPGRC RRTDGKKWRC SKEAYPDSKY CERHMHRGRN RSRKPVEANS 120 SSSSSSSSSS TAPPAPPTTA AASILSPSFP SINSNLPTSS SSLSFSPMAT ENFTHFDPFL 180 YSHSSTRLHG SGLSVPSHHF LDSGTGIDYP QTDKIYRYVH GTREVVDERS FFPEASGSVR 240 VVPDSYQSLT MVQSFGDNNG SKQGQQCFVL GTDIKSAKPI KLEKDEGTQK PVHQFLGDWT 300 QGNNNGSWLD LASNSRVQSD S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455302.1	0.0	PREDICTED: growth-regulating factor 5 isoform X1
TrEMBL	A0A0D2UPM3	0.0	A0A0D2UPM3_GOSRA; Uncharacterized protein
STRING	Gorai.011G058800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4567	26	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	8e-64	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Gorai.011G058800.1
Entrez Gene	105776896

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]