PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G058300.5
Common NameB456_011G058300, LOC105776772
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 607aa    MW: 66084.2 Da    PI: 6.9072
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G058300.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.1e-09491539348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Gorai.011G058300.5 491 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 539
                         7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.926484543IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-13486546IPR009057Homeodomain-like
SMARTSM007178.3E-10488541IPR001005SANT/Myb domain
CDDcd116601.02E-19490540No hitNo description
SuperFamilySSF466892.09E-16490549IPR009057Homeodomain-like
PfamPF002493.8E-7491539IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MEKVVEAEGS DEGKFEETGL ETSNFVLSSP KNVTDPVVYK LVRVDGNGRL VPATDDELME  60
VEGLLENEKR ETHIVADTGQ ALGCISNEVS PSGMPQLESS EGLSQSENTE ADTEKLSAYL  120
EETVPSGAKS SSDDHVTQSG RVGECLKPLD GPLEGGSSTS TGCISSKPDF SKLKGEICLD  180
NLSIKELHEV FKATFGRDTT VKDKLWLKRR IAMGLTNSCD VSATTFVIKD NKLVKKDNED  240
GFNNVNLGAG KEHLAVAVEY NEDLLNNLSS QIDEHQTTSE VRLGNNVVEN NFASEDLAAD  300
QRAAKRVRKP TKRYIEELSE AESKEYSGRS IASTKSIGFR PLSSKAHARP ARNVSLEGRT  360
VITRLDSLGG FGIQVPCVYR IRRSRPRKNV TALLKFHPSG MGMTATFIKK GFDVHGSQMD  420
NGSMNKVLEA KSTPEQAPEQ FVAESKKETT PTDMGQNMGL KYVDPSGDTS DDNVVTVPTA  480
KGGIRRKHHR AWTLSEVMKL VEGVSKYGAG RWSEIKRLAF ASYSYRTSVD LKDKWRNLLK  540
ASFAQTPTDK GANSRKHPSM PIPASILLRV RELAEMQAQA SLPNLSTGKL SACGGGSVNE  600
TRPGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381387RRSRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455128.10.0PREDICTED: uncharacterized protein LOC105776772
TrEMBLA0A0D2VIS50.0A0A0D2VIS5_GOSRA; Uncharacterized protein
STRINGGorai.011G058300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-133TRF-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]