PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G058300.4 | ||||||||
Common Name | B456_011G058300, LOC105776772 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 549aa MW: 59790.3 Da PI: 8.4497 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.5 | 3.6e-09 | 433 | 481 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r Rt ++k++w+++l Gorai.011G058300.4 433 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 481 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.926 | 426 | 485 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-13 | 428 | 488 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-10 | 430 | 483 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 8.46E-20 | 432 | 482 | No hit | No description |
SuperFamily | SSF46689 | 1.79E-16 | 432 | 491 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-7 | 433 | 481 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MEVEGLLENE KRETHIVADT GQALGCISNE VSPSGMPQLE SSEGLSQSEN TEADTEKLSA 60 YLEETVPSGA KSSSDDHVTQ SGRVGECLKP LDGPLEGGSS TSTGCISSKP DFSKLKGEIC 120 LDNLSIKELH EVFKATFGRD TTVKDKLWLK RRIAMGLTNS CDVSATTFVI KDNKLVKKDN 180 EDGFNNVNLG AGKEHLAVAV EYNEDLLNNL SSQIDEHQTT SEVRLGNNVV ENNFASEDLA 240 ADQRAAKRVR KPTKRYIEEL SEAESKEYSG RSIASTKSIG FRPLSSKAHA RPARNVSLEG 300 RTVITRLDSL GGFGIQVPCV YRIRRSRPRK NVTALLKFHP SGMGMTATFI KKGFDVHGSQ 360 MDNGSMNKVL EAKSTPEQAP EQFVAESKKE TTPTDMGQNM GLKYVDPSGD TSDDNVVTVP 420 TAKGGIRRKH HRAWTLSEVM KLVEGVSKYG AGRWSEIKRL AFASYSYRTS VDLKDKWRNL 480 LKASFAQTPT DKGANSRKHP SMPIPASILL RVRELAEMQA QASLPNLSTG KLSACGGGSV 540 NETRPGYL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 323 | 329 | RRSRPRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455128.1 | 0.0 | PREDICTED: uncharacterized protein LOC105776772 | ||||
TrEMBL | A0A0D2VIS5 | 0.0 | A0A0D2VIS5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G058300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-125 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G058300.4 |
Entrez Gene | 105776772 |
Publications ? help Back to Top | |||
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