PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G056300.1 | ||||||||
Common Name | B456_011G056300, LOC105776485 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 391aa MW: 43735.3 Da PI: 4.5771 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 3e-19 | 120 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Gorai.011G056300.1 120 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 169 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.092 | 120 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 120 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.85E-33 | 120 | 178 | No hit | No description |
SuperFamily | SSF54171 | 4.64E-22 | 120 | 178 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.2E-38 | 120 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 121 | 132 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-12 | 121 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MCGGAIISDF IPPSRSRRLT ADFLWPDLKK SGLKKGSGKR YSKPVIDLGD DFETDFQEFK 60 DEESDIDDYD VDDVLADVKP FAFNARTKPA SAVSHGSNSE KSMQFDGQAE KCGKRKRKNQ 120 YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DAEARRIRGK KAKVNFPNET 180 PRTSPKHAVK TNSQKPLSKS NLSPVQPNLN QNYNYLNQPE QEYFDTMGFV EEKPSVNQFA 240 YVDPVPMSID AGFNQSDNAP LYFNSDQGSN SINCSDYGWG EQGAKTPEIS SILEASVEGD 300 EFLEDANPSK KLKPSSDNVM PAEDNSAKTL SDELLALDNQ MKYFQMPPFI EGNWDATIDA 360 FLNGDATQDG GNPMDLWNFD DFPTMEEGVF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 120 | 177 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 6e-21 | 119 | 179 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.2596 | 0.0 | flower|seedling| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48745547 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in seedlings, leaves, flowers, siliques and germinating seeds. {ECO:0000269|PubMed:22020282}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY781117 | 0.0 | AY781117.2 Gossypium hirsutum ethylene-responsive element binding protein ERF2 mRNA, complete cds. | |||
GenBank | KP780200 | 0.0 | KP780200.1 Gossypium hirsutum C-repeat binding factor 17 (CBF17) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454606.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_012454607.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q9SSA8 | 3e-91 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A0D2UN11 | 0.0 | A0A0D2UN11_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G056300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 2e-84 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G056300.1 |
Entrez Gene | 105776485 |