PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G048200.1
Common NameB456_011G048200, LOC105776487
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 908aa    MW: 100391 Da    PI: 6.3825
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G048200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23130231199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Gorai.011G048200.1 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 217
                         99*****************************86555544..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Gorai.011G048200.1 218 -WNDKNQLLLGIRRA 231
                         .7888889****997 PP
2Auxin_resp119.82.1e-39256339183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv+ ++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Gorai.011G048200.1 256 AAHAAATNSRFTIFYNPRASPSEFVITLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 339
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-48115259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-41124245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-21129230No hitNo description
SMARTSM010193.3E-24130232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492130232IPR003340B3 DNA binding domain
PfamPF023628.2E-22130231IPR003340B3 DNA binding domain
PfamPF065072.7E-34256339IPR010525Auxin response factor
PfamPF023094.3E-8763863IPR033389AUX/IAA domain
SuperFamilySSF542773.27E-7766849No hitNo description
PROSITE profilePS5174524.264774858IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MRLSSAGFNP PNQEDTAGEK RVLNSELWHA CAGPLVSLPH VGSRVVYFPQ GHSEQVAATT  60
NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLSPQEQ KEAYLPAELG  120
TPGKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FTQQPPAQEL IARDLHDNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND KNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHL GLLAAAAHAA ATNSRFTIFY NPRASPSEFV ITLSKYVKAV YHTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS PFPLRLKRPW PPGLPSFHGL KDDDLGMSSL MWLQGDAGRG MQHLNFQGIG  420
VSPWMQSRLD ASMLGLQTDM YQAMAAAALQ EMRTVDPSRS GTASLQFQQP QNGPCRPAAL  480
VQPQMLQQTL PQAILQGVED NQHQSQPHLL QQQLQHQNSF NNQQQHQQQP LFNNQQQQQP  540
QHSMSQQHQQ LVDHQQIPSP VSAMSQYASA SQSQSSPLQS IPSLGQQQSF SDSNGNPVTS  600
PVVSPLHSLL GSFPQDESSN LLNLPRTNPI MTTSAWPSKR VAVDVLSSGS PQCVLPQVEQ  660
LGPSQTNMSQ NSISLPPFPG RECSIDQGGT DSQSHLLFGV NIEPSSVLMQ NGMSGLRGVG  720
TDSDSTSIPF FSNYMSTAGN DFSVNPAMTP SSCIDESGFL QSQENVGQSN PQTRTFVKVY  780
KSGSFGRSLD ISAFSNYNEL RSELAHMFGL EGQLEDPLRS GWQLVFVDRE NDVLLLGDDP  840
WPEFVNSVWC IKILSPQEVQ QMGKRGLELL NSVPVQRLSN GSCDDYVSRQ DSRNLSSGIA  900
SVGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591436041388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454611.10.0PREDICTED: auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0D2UP210.0A0A0D2UP21_GOSRA; Auxin response factor
STRINGGorai.011G048200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]