PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G046000.2

Common Name

B456_011G046000, LOC105776693

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 464aa MW: 50079.8 Da PI: 7.5515

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G046000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.2	1.2e-37	83	240	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssss 69 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ +++s Gorai.011G046000.2 83 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSLntsfpdtpkqlsdekrgsggieqGFDS 173 689***********************************************************777776666666666666655555555 PP TCP 70 aseceaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 a+ +++ s+ +++ s +k+a+s++++ ++++s + ++ + r kar+rarert++++ +++ Gorai.011G046000.2 174 AEVELDGDPSNYQQHLSLSKSASSSTSETRKNSSLSLSRSGTRVNRVKARERARERTAKEKEGHQQQ 240 5333666666666666666777777777777777776777777999*******888776655444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-42	84	235	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.105	85	143	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.946	216	234	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MEVDEIQTQT CKFSTVGNGR NETSKIGQKG SDSNFPDDEE DGELIKRAAA TAVANGGVAD 60 TIGTNSLRGW HNSSRIIRVS RASGGKDRHS KVWTSKGLRD RRVRLSVTTA IQFYDLQDRL 120 GYDQPSKAVE WLIKAASDAI AELPSLNTSF PDTPKQLSDE KRGSGGIEQG FDSAEVELDG 180 DPSNYQQHLS LSKSASSSTS ETRKNSSLSL SRSGTRVNRV KARERARERT AKEKEGHQQQ 240 NVSPISQNSS FTELLTSGIG NVSNNNTSPS ASASASAHQD PSAESDFYQK ANSTARLWPV 300 TPMDYFASGL LGPSSSRGHH SSGFPGGQIH LVNSLQQPMT TPPFTVSGEN HQEMQHFSFV 360 PNPDHLIPVA TTQPGQGVDY NLNFTISSGL AGFNRGTLQS NSPFLPPHLQ RFSSIDGSSP 420 LYIGTPPVEN HHHHQFTAGL DGRLQLCYGD GNRSSDQKGK GKN*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MEVDEIQTQT CKFSTVGNGR NETSKIGQKG SDSNFPDDEE DGELIKRAAA TAVANGGVAD  60
TIGTNSLRGW HNSSRIIRVS RASGGKDRHS KVWTSKGLRD RRVRLSVTTA IQFYDLQDRL  120
GYDQPSKAVE WLIKAASDAI AELPSLNTSF PDTPKQLSDE KRGSGGIEQG FDSAEVELDG  180
DPSNYQQHLS LSKSASSSTS ETRKNSSLSL SRSGTRVNRV KARERARERT AKEKEGHQQQ  240
NVSPISQNSS FTELLTSGIG NVSNNNTSPS ASASASAHQD PSAESDFYQK ANSTARLWPV  300
TPMDYFASGL LGPSSSRGHH SSGFPGGQIH LVNSLQQPMT TPPFTVSGEN HQEMQHFSFV  360
PNPDHLIPVA TTQPGQGVDY NLNFTISSGL AGFNRGTLQS NSPFLPPHLQ RFSSIDGSSP  420
LYIGTPPVEN HHHHQFTAGL DGRLQLCYGD GNRSSDQKGK GKN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-23	90	144	1	55	Putative transcription factor PCF6
5zkt_B	2e-23	90	144	1	55	Putative transcription factor PCF6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2075	0.0	flower\|seedling\| flowering

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269\|PubMed:10363373, ECO:0000269\|PubMed:25378179}.
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269\|PubMed:17307931}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179, ECO:0000269\|PubMed:26596765}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:26596765}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454993.1	0.0	PREDICTED: transcription factor TCP2-like
Refseq	XP_012454994.1	0.0	PREDICTED: transcription factor TCP2-like
Refseq	XP_012454995.1	0.0	PREDICTED: transcription factor TCP2-like
Refseq	XP_012454996.1	0.0	PREDICTED: transcription factor TCP2-like
Swissprot	Q93V43	5e-76	TCP2_ARATH; Transcription factor TCP2
TrEMBL	A0A0D2UNY1	0.0	A0A0D2UNY1_GOSRA; Uncharacterized protein
STRING	Gorai.011G046000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	2e-42	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Link Out ? help Back to Top
Phytozome	Gorai.011G046000.2
Entrez Gene	105776693

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]