PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G039600.3

Common Name

B456_011G039600, LOC105776845

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 304aa MW: 33982.4 Da PI: 9.4659

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G039600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.7	2.3e-16	32	123	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ ++ + + +s++p+f++l+ Gorai.011G039600.3 32 CWSEEATSTLVDAWGRRYVELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKTRVSSSNGTLTSSWPFFERLD 122 7**************************************99999**********************9999888899*****98 PP trihelix 87 a 87 a Gorai.011G039600.3 123 A 123 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-26	30	124	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MADLTDSVMQ SAVITPPSTT PNTRTLPVRE DCWSEEATST LVDAWGRRYV ELNRGNLRQK 60 DWQDVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKIE KTRVSSSNGT LTSSWPFFER 120 LDALIGSNFA AKKLSTSPKI SPKPSPRLSP RIPGSPPVAL PLLLPYRRTP PAPTAIVALP 180 QKRPAVDDGY FKRNYSAVAA AAAAAAAESD EEEGEESEGE ESEGEGEERE GMKRLARALE 240 RFGQVYERVE GEKLRQMVEL EKQRMQFAKD LEVQRMRMFM DTQVQLEKIK RGKRSSGSSD 300 IYS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00413	DAP	Transfer from AT3G58630	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455238.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
Refseq	XP_016711272.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	7e-33	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A0D2UNL7	0.0	A0A0D2UNL7_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8L9J1	0.0	A0A1U8L9J1_GOSHI; trihelix transcription factor ASIL2-like
STRING	Gorai.011G039600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	7e-43	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Gorai.011G039600.3
Entrez Gene	105776845

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]