PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G039000.5 | ||||||||
Common Name | B456_011G039000, LOC105777006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 237aa MW: 27265.5 Da PI: 9.7546 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 29.1 | 2.2e-09 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+v gL+++hvkSHLQ+YR+ Gorai.011G039000.5 1 MNVRGLSIAHVKSHLQMYRS 20 9******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-8 | 1 | 21 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MNVRGLSIAH VKSHLQMYRS KKLDEAGQVL SQSKRAIQGR GEFGSLLCQA ITTLSPHHGH 60 QQQHFRMENG GIVLASESLD GSNTTFKANF PRHHQFPNSF ISKAFGQENG FYIQNQIHGT 120 GPIRAMASRF LEEKRWHPFE RISNRWKVNG NMYKDMQSQS HCFWQRPSSD EDKHEPLTKF 180 SSCRTEFEWN QDKVLKDGER LPDLQLRLSQ RNGKFDEEKN NHCKGTHEIS TQLSLS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY632360 | 1e-159 | AY632360.1 Gossypium hirsutum BAC 106I22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455487.1 | 1e-178 | PREDICTED: two-component response regulator ARR14-like | ||||
Refseq | XP_012455488.1 | 1e-178 | PREDICTED: two-component response regulator ARR14-like | ||||
Refseq | XP_012455490.1 | 1e-178 | PREDICTED: two-component response regulator ARR14-like | ||||
TrEMBL | A0A0D2T1Z4 | 1e-176 | A0A0D2T1Z4_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2ULW1 | 1e-177 | A0A0D2ULW1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G039000.1 | 1e-177 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 3e-10 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G039000.5 |
Entrez Gene | 105777006 |
Publications ? help Back to Top | |||
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