PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G039000.2 | ||||||||
Common Name | B456_011G039000, LOC105777006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 350aa MW: 40175.7 Da PI: 7.898 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.3 | 2.7e-31 | 80 | 133 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Gorai.011G039000.2 80 PRLRWTPDLHYSFVRAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 133 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-29 | 76 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.714 | 76 | 136 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-14 | 79 | 134 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-22 | 80 | 135 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-8 | 81 | 132 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MIEMHDEEQG EDVCAMPSRS RKCSSFDLND EAGSERDCIG ETSVEEEEIE NITEGSSSNN 60 NNGNGNDRRR VRQYVRSKLP RLRWTPDLHY SFVRAVERLG GQERATPKLV LQLMNVRGLS 120 IAHVKSHLQM YRSKKLDEAG QVLSQSKRAI QGRGEFGSLL CQAITTLSPH HGHQQQHFRM 180 ENGGIVLASE SLDGSNTTFK ANFPRHHQFP NSFISKAFGQ ENGFYIQNQI HGTGPIRAMA 240 SRFLEEKRWH PFERISNRWK VNGNMYKDMQ SQSHCFWQRP SSDEDKHEPL TKFSSCRTEF 300 EWNQDKVLKD GERLPDLQLR LSQRNGKFDE EKNNHCKGTH EISTQLSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-18 | 81 | 135 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-18 | 81 | 135 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-18 | 81 | 135 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-18 | 81 | 135 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY632360 | 1e-168 | AY632360.1 Gossypium hirsutum BAC 106I22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455487.1 | 0.0 | PREDICTED: two-component response regulator ARR14-like | ||||
Refseq | XP_012455488.1 | 0.0 | PREDICTED: two-component response regulator ARR14-like | ||||
Refseq | XP_012455490.1 | 0.0 | PREDICTED: two-component response regulator ARR14-like | ||||
TrEMBL | A0A0D2T1Z4 | 0.0 | A0A0D2T1Z4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G039000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-37 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G039000.2 |
Entrez Gene | 105777006 |
Publications ? help Back to Top | |||
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