PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G036300.1

Common Name

B456_011G036300, LOC105777900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

BES1

Protein Properties

Length: 320aa MW: 34237.2 Da PI: 8.8613

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G036300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	203.5	6.3e-63	2	126	1	125
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 ++++r+ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp ++++++g sasasp+ Gorai.011G036300.1 2 TSGTRMPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVDRMDIMGGSASASPC 92 5899************************************************************************************* PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssl 125 ss++ s+ ss+++sp++s + ++ + ++s + Gorai.011G036300.1 93 SSYHPSPGSSSFPSPASSHYTANANGNADANSLI 126 **888888888888777666666555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	8.5E-60	3	133	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MTSGTRMPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCNEAG 60 WTVEEDGTTY RKGCKPVDRM DIMGGSASAS PCSSYHPSPG SSSFPSPASS HYTANANGNA 120 DANSLIPWLK NLSSGSSSAS SKLAHHLFIA GGSISAPVTP PLSSPTSRTP RTRSDWDEMN 180 AGPTCTGKRF SYLPASTPPS PSRQVFPDPG WLSRLEIPQS GPTSPTFSLV SRNPFGFKDE 240 ALSGGGSRMW TPGQSGTCSP AFPAGVDQTS DVPMSDAIAA EFAFGSNMTG LVKPWEGEKI 300 HEECVANDLE LTLGNSKTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	5e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	5e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	5e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	5e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012456862.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4-like isoform X1
Refseq	XP_012456863.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4-like isoform X2
Swissprot	Q9ZV88	1e-130	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A0D2UNH1	0.0	A0A0D2UNH1_GOSRA; Uncharacterized protein
STRING	Gorai.011G036300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-106	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Gorai.011G036300.1
Entrez Gene	105777900

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]