PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G035500.9 | ||||||||
Common Name | B456_011G035500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27440.1 Da PI: 9.6569 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99 | 1.9e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ Gorai.011G035500.9 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 73 79***********************************************8 PP | |||||||
2 | K-box | 109.7 | 3.2e-36 | 91 | 185 | 4 | 98 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 s++ s++e +a+ +qqe++kL+++i+nLq+ +Rh+lGe+++ L +keL++Le++Lek++++iRskKnell+++ie++qkke +l+++n+ L Gorai.011G035500.9 91 SNTGSVAEVNAQFYQQEADKLRNQIRNLQNINRHMLGESVGGLPMKELKSLESRLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQLL 181 3344499************************************************************************************ PP K-box 95 rkkl 98 r+k Gorai.011G035500.9 182 RAKQ 185 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-42 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 34.076 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-34 | 17 | 105 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.73E-46 | 17 | 91 | No hit | No description |
PRINTS | PR00404 | 5.7E-33 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-26 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-33 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-33 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-26 | 100 | 184 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.666 | 101 | 191 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVYPNESLED SPQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSNRGRLY EYANNSVKAT IERYKKASDS SNTGSVAEVN AQFYQQEADK LRNQIRNLQN 120 INRHMLGESV GGLPMKELKS LESRLEKGIS RIRSKKNELL FAEIEYMQKK EIDLHNNNQL 180 LRAKQSMNLM PGGSSNNFED IHSQPYDSRN YFQVDALQPA ANYYNPQQQQ DQIVLQLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-21 | 16 | 89 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-21 | 16 | 89 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-21 | 16 | 89 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-21 | 16 | 89 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6bz1_A | 6e-21 | 16 | 96 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 6e-21 | 16 | 96 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 6e-21 | 16 | 96 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 6e-21 | 16 | 96 | 1 | 83 | MEF2 CHIMERA |
6c9l_A | 5e-21 | 16 | 89 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-21 | 16 | 89 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-21 | 16 | 89 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-21 | 16 | 89 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-21 | 16 | 89 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-21 | 16 | 89 | 1 | 74 | Myocyte-specific enhancer factor 2B |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1551 | 0.0 | flower| flowering |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF190547 | 0.0 | EF190547.1 Gossypium hirsutum MADS-box protein MADS4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455289.1 | 1e-168 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X1 | ||||
Refseq | XP_012455290.1 | 1e-168 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X1 | ||||
Refseq | XP_012455291.1 | 1e-168 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X2 | ||||
Swissprot | Q40168 | 1e-116 | AG_SOLLC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A0D2VHP9 | 1e-174 | A0A0D2VHP9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G035500.1 | 1e-166 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-106 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G035500.9 |
Publications ? help Back to Top | |||
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