PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G035500.6
Common NameB456_011G035500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 186aa    MW: 21353.5 Da    PI: 10.2239
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G035500.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.2e-312473150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Gorai.011G035500.6 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 73
                        79***********************************************8 PP
2K-box1125.9e-3791185498
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         s++ s++e +a+ +qqe++kL+++i+nLq+ +Rh+lGe+++ L +keL++Le++Lek++++iRskKnell+++ie++qkke +l+++n+ L
  Gorai.011G035500.6  91 SNTGSVAEVNAQFYQQEADKLRNQIRNLQNINRHMLGESVGGLPMKELKSLESRLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQLL 181
                         3344499************************************************************************************ PP

               K-box  95 rkkl 98 
                         r+k+
  Gorai.011G035500.6 182 RAKV 185
                         *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-421675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.0761676IPR002100Transcription factor, MADS-box
CDDcd002656.83E-451791No hitNo description
SuperFamilySSF554552.35E-3417105IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003197.4E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-335374IPR002100Transcription factor, MADS-box
PfamPF014861.7E-27100185IPR002487Transcription factor, K-box
PROSITE profilePS5129714.729101185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVYPNESLED SPQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSNRGRLY EYANNSVKAT IERYKKASDS SNTGSVAEVN AQFYQQEADK LRNQIRNLQN  120
INRHMLGESV GGLPMKELKS LESRLEKGIS RIRSKKNELL FAEIEYMQKK EIDLHNNNQL  180
LRAKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-221689174Myocyte-specific enhancer factor 2B
1tqe_Q9e-221689174Myocyte-specific enhancer factor 2B
1tqe_R9e-221689174Myocyte-specific enhancer factor 2B
1tqe_S9e-221689174Myocyte-specific enhancer factor 2B
6c9l_A9e-221689174Myocyte-specific enhancer factor 2B
6c9l_B9e-221689174Myocyte-specific enhancer factor 2B
6c9l_C9e-221689174Myocyte-specific enhancer factor 2B
6c9l_D9e-221689174Myocyte-specific enhancer factor 2B
6c9l_E9e-221689174Myocyte-specific enhancer factor 2B
6c9l_F9e-221689174Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.15510.0flower| flowering
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1905470.0EF190547.1 Gossypium hirsutum MADS-box protein MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455289.11e-132PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_012455290.11e-132PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_012455291.11e-132PREDICTED: floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ401681e-105AG_SOLLC; Floral homeotic protein AGAMOUS
TrEMBLA0A0D2ULS61e-131A0A0D2ULS6_GOSRA; Uncharacterized protein
TrEMBLA0A0D2VHP61e-132A0A0D2VHP6_GOSRA; Uncharacterized protein
STRINGGorai.011G035500.11e-131(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.15e-93MIKC_MADS family protein
Publications ? help Back to Top
  1. Pan IL,McQuinn R,Giovannoni JJ,Irish VF
    Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development.
    J. Exp. Bot., 2010. 61(6): p. 1795-806
    [PMID:20335407]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Gimenez E, et al.
    TOMATO AGAMOUS1 and ARLEQUIN/TOMATO AGAMOUS-LIKE1 MADS-box genes have redundant and divergent functions required for tomato reproductive development.
    Plant Mol. Biol., 2016. 91(4-5): p. 513-31
    [PMID:27125648]