PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G035500.1
Common NameB456_011G035500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 271aa    MW: 31137.4 Da    PI: 9.4945
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G035500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.72.3e-314897150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Gorai.011G035500.1 48 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 97
                        79***********************************************8 PP
2K-box113.22.6e-371152114100
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         s++ s++e +a+ +qqe++kL+++i+nLq+ +Rh+lGe+++ L +keL++Le++Lek++++iRskKnell+++ie++qkke +l+++n+ L
  Gorai.011G035500.1 115 SNTGSVAEVNAQFYQQEADKLRNQIRNLQNINRHMLGESVGGLPMKELKSLESRLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQLL 205
                         3344499************************************************************************************ PP

               K-box  95 rkklee 100
                         r+k++e
  Gorai.011G035500.1 206 RAKIAE 211
                         ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.07640100IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-424099IPR002100Transcription factor, MADS-box
CDDcd002651.36E-4541115No hitNo description
SuperFamilySSF554555.49E-3441129IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-334262IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004296IPR002100Transcription factor, MADS-box
PfamPF003191.4E-264996IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-336277IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-337798IPR002100Transcription factor, MADS-box
PfamPF014861.9E-27124209IPR002487Transcription factor, K-box
PROSITE profilePS5129715.128125215IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MCFSEKIVNG TIAFIMVYFF QLGSMVYPNE SLEDSPQKKM GRGKIEIKRI ENTTNRQVTF  60
CKRRNGLLKK AYELSVLCDA EVALIVFSNR GRLYEYANNS VKATIERYKK ASDSSNTGSV  120
AEVNAQFYQQ EADKLRNQIR NLQNINRHML GESVGGLPMK ELKSLESRLE KGISRIRSKK  180
NELLFAEIEY MQKKEIDLHN NNQLLRAKIA ENERKQQSMN LMPGGSSNNF EDIHSQPYDS  240
RNYFQVDALQ PAANYYNPQQ QQDQIVLQLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-2040113174Myocyte-specific enhancer factor 2B
1tqe_Q1e-2040113174Myocyte-specific enhancer factor 2B
1tqe_R1e-2040113174Myocyte-specific enhancer factor 2B
1tqe_S1e-2040113174Myocyte-specific enhancer factor 2B
6c9l_A1e-2040113174Myocyte-specific enhancer factor 2B
6c9l_B1e-2040113174Myocyte-specific enhancer factor 2B
6c9l_C1e-2040113174Myocyte-specific enhancer factor 2B
6c9l_D1e-2040113174Myocyte-specific enhancer factor 2B
6c9l_E1e-2040113174Myocyte-specific enhancer factor 2B
6c9l_F1e-2040113174Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.15510.0flower| flowering
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected early in the floral meristem but mostly expressed in stamen and carpel primordia. {ECO:0000269|PubMed:1675158}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms a heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development. Controls AHL21/GIK, a multifunctional chromatin modifier in reproductive organ patterning and differentiation (PubMed:19956801). Induces microsporogenesis through the activation of SPL/NZZ (PubMed:15254538). {ECO:0000269|PubMed:15254538, ECO:0000269|PubMed:19956801}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by the A class floral homeotic protein APETALA2 and by other repressors like LEUNIG, SEUSS, SAP or CURLY LEAF. Positively regulated by both LEAFY and APETALA1. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. Up-regulated by HUA2. {ECO:0000269|PubMed:10198637, ECO:0000269|PubMed:11058164, ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:17794879, ECO:0000269|PubMed:18281509, ECO:0000269|PubMed:19783648, ECO:0000269|PubMed:9783581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1905470.0EF190547.1 Gossypium hirsutum MADS-box protein MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711290.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_016711291.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X2
RefseqXP_017646539.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_017646541.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X2
RefseqXP_017646542.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X3
SwissprotP178391e-122AG_ARATH; Floral homeotic protein AGAMOUS
TrEMBLA0A0D2RGE00.0A0A0D2RGE0_GOSRA; Uncharacterized protein
STRINGGorai.011G035500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61812237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-112MIKC_MADS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Huang Z, et al.
    APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana.
    New Phytol., 2017. 215(3): p. 1197-1209
    [PMID:27604611]
  3. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  4. Uemura A, et al.
    Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis.
    Plant Reprod, 2018. 31(1): p. 89-105
    [PMID:29218596]