PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G029400.1
Common NameB456_011G029400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 196aa    MW: 22679.7 Da    PI: 8.3041
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G029400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.53.9e-43109186178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqve+C+ad+++ak+yhrrhkvCe+h+kapvv v+g++qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk+++
  Gorai.011G029400.1 109 ACQVENCTADMTDAKRYHRRHKVCEFHAKAPVVRVAGIHQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKSSS 186
                         5**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-34105171IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.889107184IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-40108188IPR004333Transcription factor, SBP-box
PfamPF031104.1E-33110183IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVLIHDSPLL LLLFLPFFNL IISQRDYFFI LPHRKPLHLI HLLFSFVIFK QNPEMATSKA  60
EGKRRLKEMA EEEEEEEEDE DNSTTGDDDK KKKGKRGSST VVGGSCPPAC QVENCTADMT  120
DAKRYHRRHK VCEFHAKAPV VRVAGIHQRF CQQCSRFHEL SEFDETKRSC RRRLAGHNER  180
RRKSSSEYHG EGSNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-37103183484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223110.0KJ622311.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455582.11e-100PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ387418e-53SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A0D2SZ401e-143A0A0D2SZ40_GOSRA; Uncharacterized protein
STRINGGorai.011G029400.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.14e-45squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]