PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G029300.2

Common Name

B456_011G029300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 290aa MW: 31335 Da PI: 8.8817

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G029300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	36	96	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Gorai.011G029300.2 36 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 96 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.1E-34	38	94	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-27	39	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MLRNCEKMVA VITSSATNEW PQLMEKPSQE QQQVQQQQAL KCPRCDSSNT KFCYYNNYSL 60 SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRVKRPTV SASTPPSIGG ASPTSGGGGG 120 VNHNSTTSSH HINPLFYGLT ANDPYHDVIN LPFSRSSTVT GYDLQPQMSG LGLGFSSGDN 180 TDHYPPLLSS YTNIFGSSSS SSTTTTTPTI ASLLASTLNQ HKFINGGVKN TEALPPFPDL 240 QTAAMKDIKV PCQNHLEQIT SLDPSLYWST NIGAWHDPTN IGSSVTSLI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU532295	0.0	EU532295.1 Gossypium barbadense clone I10-23 ISSR marker genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012456892.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
Swissprot	Q9FZA4	4e-39	DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBL	A0A0D2UN94	0.0	A0A0D2UN94_GOSRA; Uncharacterized protein
STRING	Gorai.011G029300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	2e-36	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G029300.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]