PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G029300.1

Common Name

B456_011G029300, LOC105777919

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 291aa MW: 31463.2 Da PI: 9.0465

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G029300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Gorai.011G029300.1 37 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 97 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.1E-34	39	95	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-27	40	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MLRNCEKMVA VITSSATNEW PQKLMEKPSQ EQQQVQQQQA LKCPRCDSSN TKFCYYNNYS 60 LSQPRHFCKA CKRYWTRGGT LRNVPVGGGC RKNKRVKRPT VSASTPPSIG GASPTSGGGG 120 GVNHNSTTSS HHINPLFYGL TANDPYHDVI NLPFSRSSTV TGYDLQPQMS GLGLGFSSGD 180 NTDHYPPLLS SYTNIFGSSS SSSTTTTTPT IASLLASTLN QHKFINGGVK NTEALPPFPD 240 LQTAAMKDIK VPCQNHLEQI TSLDPSLYWS TNIGAWHDPT NIGSSVTSLI *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU532295	0.0	EU532295.1 Gossypium barbadense clone I10-23 ISSR marker genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012456892.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
Swissprot	Q9FZA4	4e-39	DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBL	A0A0D2VHI6	0.0	A0A0D2VHI6_GOSRA; Uncharacterized protein
STRING	Gorai.011G029300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	2e-36	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G029300.1
Entrez Gene	105777919

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]