PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G029200.2

Common Name

B456_011G029200, LOC105778612

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 252aa MW: 27824.1 Da PI: 10.1603

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G029200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.4	1.3e-37	29	86	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ +kcprC+s+ntkfCyynnyslsqPryfCkaCrryWt+GG lrnvPvGgg+rk k+ Gorai.011G029200.2 29 HTPQKCPRCESRNTKFCYYNNYSLSQPRYFCKACRRYWTQGGILRNVPVGGGCRKGKR 86 56789**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-24	31	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-32	31	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.696	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MKQNQQQGRR LKPLMAAEHH HHQQQQQQHT PQKCPRCESR NTKFCYYNNY SLSQPRYFCK 60 ACRRYWTQGG ILRNVPVGGG CRKGKRPKLS SSGDDNPTRQ ATQRNLISPP VQLQAKESDS 120 LVSSSAAMGS YYPASGFLSS LAAIQPMNQP QCLKQPLNQA LRIGGGDLGS SSSNLGLLQG 180 YGVPFLGSQH HQQTQFQWPA AGNSYYQQNW HQNFINEAVT STAKVTNTSN SKTASSLSPN 240 QWPDLPAYGA P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF351546	2e-59	AF351546.1 Gossypium hirsutum clone JESPR309 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457796.1	0.0	PREDICTED: dof zinc finger protein DOF4.4-like
TrEMBL	A0A0D2T1K6	0.0	A0A0D2T1K6_GOSRA; Uncharacterized protein
STRING	Gorai.011G029200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	7e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G029200.2
Entrez Gene	105778612

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]