PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G022400.3
Common NameB456_011G022400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 560aa    MW: 61671.5 Da    PI: 7.7478
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G022400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.37e-19342441198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ + 
  Gorai.011G022400.3 342 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDVVTFSRLE- 430
                         89**************************555566778***************9989999999***9.********************665. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          +++lv+++++
  Gorai.011G022400.3 431 PGGKLVMGFRK 441
                         77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-32333449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-20339441IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-22340441No hitNo description
PfamPF023624.7E-16342441IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194342443IPR003340B3 DNA binding domain
SMARTSM010194.7E-20342443IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MTSTSVATSS SRICFNSVCN DLKSERPRKG WQLRTGELAE LCDRCASIYD EGRFCDAFHL  60
NASGWRTCES CGKRVHCGCI VSAYAFALLD AGGILCIACS RKNAVLGPNS SWPPSLLFNS  120
SLPERFKDCS AKGWSQLTGS GPAPWRQAPG LFNSSTSQPE LHSRVPYEVD LSTGIDRLNV  180
SERLSIPSLE KKKNEDFPER LMNGPLKPSA HDIHENGNTG INCEEQHTSC LTKPQLPSLK  240
EDSSNPPFGL AVPYTSIDEA NGQMGVSGTH LRPNPQPSLA KQFHSNPHNG LDSSGETQMR  300
NGRPRADGRG RNQLFPRYWP RFTDQDLQQI SADSNSIITP LFEKMLSASD AGRIGRLVLP  360
KKCAEAYFPP ISQPEGLPLK VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA  420
GDVVTFSRLE PGGKLVMGFR KASAASASEQ ENEAKNSNGV STHGDAELAD PSSWSKVDKS  480
GYIAKEALGT KVAVPRKRKN SVLGSKSKRL RIDNEDMIEL KLTWEEAQGL LRPPPNHVAN  540
VVSIEGFEFE EYEVSYIFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C9e-663204451126B3 domain-containing transcription repressor VAL1
5yzz_C9e-663204451126B3 domain-containing transcription repressor VAL1
5z00_C9e-663204451126B3 domain-containing transcription repressor VAL1
5z00_G9e-663204451126B3 domain-containing transcription repressor VAL1
5z00_K9e-663204451126B3 domain-containing transcription repressor VAL1
5z00_M9e-663204451126B3 domain-containing transcription repressor VAL1
6j9a_A8e-663204452127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6149022e-48JX614902.1 Gossypium hirsutum clone NBRI_GE58616 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455056.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G41e-167Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0D2T1270.0A0A0D2T127_GOSRA; Uncharacterized protein
STRINGGorai.011G022400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.11e-129VP1/ABI3-like 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]