PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.011G021300.1 | ||||||||
Common Name | B456_011G021300, LOC105776454 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 171aa MW: 19247.7 Da PI: 9.6014 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.6e-15 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ ++k++G +W+ a+ g+ R++k+c++rw +yl Gorai.011G021300.1 12 KGAWSPEEDKKLIAYIKRYGIWNWAEMAKPAGLQRSGKSCRLRWVNYL 59 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 59.9 | 5.4e-19 | 66 | 109 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T+eE+e ++d++++lG++ W+ Ia++++ gRt++++k++w+ + Gorai.011G021300.1 66 GNFTKEEEETIIDLHEKLGNR-WSVIASKLP-GRTDNEIKNHWHAH 109 89*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.057 | 7 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-31 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-11 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-14 | 12 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-24 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.00E-10 | 14 | 59 | No hit | No description |
PROSITE profile | PS51294 | 26.706 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-17 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-17 | 66 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 67 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.78E-12 | 67 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MAKSVENRAL KKGAWSPEED KKLIAYIKRY GIWNWAEMAK PAGLQRSGKS CRLRWVNYLR 60 PGIKHGNFTK EEEETIIDLH EKLGNRWSVI ASKLPGRTDN EIKNHWHAHL SKRLKYDLNS 120 LPDMSDAEID QYSSFETDPP PTNVPNALIS ESSAATSTNS LPSSSSNPKQ * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-28 | 3 | 114 | 18 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ459183 | 2e-70 | AJ459183.1 Gossypium hirsutum partial myb153 gene, clone pGhMYB153. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454562.1 | 1e-123 | PREDICTED: myb-related protein Myb4-like | ||||
Refseq | XP_016731212.1 | 1e-123 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9SJX8 | 7e-52 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A0D2VFS2 | 1e-122 | A0A0D2VFS2_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8MWJ7 | 1e-122 | A0A1U8MWJ7_GOSHI; myb-related protein Myb4-like | ||||
STRING | Gorai.011G021300.1 | 1e-123 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31180.1 | 8e-54 | myb domain protein 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.011G021300.1 |
Entrez Gene | 105776454 |
Publications ? help Back to Top | |||
---|---|---|---|
|