PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G008700.6
Common NameB456_011G008700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 527aa    MW: 57545.3 Da    PI: 8.5969
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G008700.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.2e-11479524447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         WT eE++ l+++ +++G+  Wk+I +      k+Rt  ++k++w+++
  Gorai.011G008700.6 479 WTHEEEQALIKGYREYGTQ-WKLILESYRdilKKRTQVDLKDKWRNL 524
                         *****************99.*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.223471526IPR017930Myb domain
SMARTSM007170.0016475526IPR001005SANT/Myb domain
SuperFamilySSF466892.94E-11477524IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-10479524IPR009057Homeodomain-like
PfamPF139213.0E-9479525No hitNo description
CDDcd116601.89E-16479526No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MLPPTVDNVV YASAQVPSSP HPCSDEGKMG NVVSASAEAS PSPHPCADKG NVDNVISSSA  60
QVPSSPHPCT NKKKKIRRAS FQARHKPRPR CKQPRGVVIT DMEEDQPLCT KNGTPSSFEV  120
NGCLQVASKT RSAALLDGVT DSPSEALEVL ESVALVMAGK NFHPKGSVED SNKDKGDPTT  180
SFYPTTHHCT EKGKQILMVN SQTSGNPNSS HRHCEGPAAT ADIEGYRTLS TPDIDKLRDA  240
LTSSIADLTA TVADPLPKAL EVAATLVSFM EAAKSLSTDG AEGDVRKEKG VPAAPMNCNF  300
EQAQAERRAP DKAIREDQDK MARSVPASSV GHSVEPSQAK EGNETFSRPK KVPKRNLMKR  360
NDAAHTHERR APYEGIREDY NKVDGSVPAP SVNHTAEPSH SKEGNEAVIR PKKVRKRSIM  420
ERNDTAHASE WEDSIDGSDG GTSGCSNRCT LPSPKTNHVS PLKESEPQKQ KNRRKTNWWT  480
HEEEQALIKG YREYGTQWKL ILESYRDILK KRTQVDLKDK WRNLSK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454054.10.0PREDICTED: uncharacterized protein LOC105776112 isoform X1
TrEMBLA0A0D2RF440.0A0A0D2RF44_GOSRA; Uncharacterized protein
STRINGGorai.011G008700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-13TRF-like 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]