PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G008700.4

Common Name

B456_011G008700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 714aa MW: 78311.5 Da PI: 7.8543

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G008700.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35	3.2e-11	666	711	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 WT eE++ l+++ +++G+ Wk+I + k+Rt ++k++w+++ Gorai.011G008700.4 666 WTHEEEQALIKGYREYGTQ-WKLILESYRdilKKRTQVDLKDKWRNL 711 ***************99.***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.223	658	713	IPR017930	Myb domain
SMART	SM00717	0.0016	662	713	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.68E-11	665	711	IPR009057	Homeodomain-like
Pfam	PF13921	4.4E-9	666	712	No hit	No description
CDD	cd11660	4.83E-16	666	713	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-10	666	711	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009901	Biological Process	anther dehiscence
GO:0010152	Biological Process	pollen maturation
GO:0043067	Biological Process	regulation of programmed cell death
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MGDSFPLFND RDPAVLSTLK RYLSQPNNND EDNGDGYATF CFHYKGAILR SIEQRTGNST 60 VTDAVLDSLI LIENLDRRRG VLPSESMKAA FCAVAVHCTV SCLPVSWDNY FDAFQRIWGL 120 RIKSLEESGK SDLISSELVQ WGTVIEAGLW DLETSQRLSS VNTRGKALLR IKGYLEEAFR 180 SMSPALSRLA SASTTEPTVD HAASANPHPS TDEGNMGNVV SASAEASPSP HPCADKGNVD 240 NVISSSAQVP SSPHPCTNKK KKIRRASFQA RHKPRPRCKQ PRGVVITDME EDQPLCTKNG 300 TPSSFEVNGC LQVASKTRSA ALLDGVTDSP SEALEVLESV ALVMAGKNFH PKGSVEDSNK 360 DKGDPTTSFY PTTHHCTEKG KQILMVNSQT SGNPNSSHRH CEGPAATADI EGYRTLSTPD 420 IDKLRDALTS SIADLTATVA DPLPKALEVA ATLVSFMEAA KSLSTDGAEG DVRKEKGVPA 480 APMNCNFEQA QAERRAPDKA IREDQDKMAR SVPASSVGHS VEPSQAKEGN ETFSRPKKVP 540 KRNLMKRNDA AHTHERRAPY EGIREDYNKV DGSVPAPSVN HTAEPSHSKE GNEAVIRPKK 600 VRKRSIMERN DTAHASEWED SIDGSDGGTS GCSNRCTLPS PKTNHVSPLK ESEPQKQKNR 660 RKTNWWTHEE EQALIKGYRE YGTQWKLILE SYRDILKKRT QVDLKDKWRN LSK*

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MGDSFPLFND RDPAVLSTLK RYLSQPNNND EDNGDGYATF CFHYKGAILR SIEQRTGNST  60
VTDAVLDSLI LIENLDRRRG VLPSESMKAA FCAVAVHCTV SCLPVSWDNY FDAFQRIWGL  120
RIKSLEESGK SDLISSELVQ WGTVIEAGLW DLETSQRLSS VNTRGKALLR IKGYLEEAFR  180
SMSPALSRLA SASTTEPTVD HAASANPHPS TDEGNMGNVV SASAEASPSP HPCADKGNVD  240
NVISSSAQVP SSPHPCTNKK KKIRRASFQA RHKPRPRCKQ PRGVVITDME EDQPLCTKNG  300
TPSSFEVNGC LQVASKTRSA ALLDGVTDSP SEALEVLESV ALVMAGKNFH PKGSVEDSNK  360
DKGDPTTSFY PTTHHCTEKG KQILMVNSQT SGNPNSSHRH CEGPAATADI EGYRTLSTPD  420
IDKLRDALTS SIADLTATVA DPLPKALEVA ATLVSFMEAA KSLSTDGAEG DVRKEKGVPA  480
APMNCNFEQA QAERRAPDKA IREDQDKMAR SVPASSVGHS VEPSQAKEGN ETFSRPKKVP  540
KRNLMKRNDA AHTHERRAPY EGIREDYNKV DGSVPAPSVN HTAEPSHSKE GNEAVIRPKK  600
VRKRSIMERN DTAHASEWED SIDGSDGGTS GCSNRCTLPS PKTNHVSPLK ESEPQKQKNR  660
RKTNWWTHEE EQALIKGYRE YGTQWKLILE SYRDILKKRT QVDLKDKWRN LSK*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00052	PBM	Transfer from AT1G15720	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454058.1	0.0	PREDICTED: uncharacterized protein LOC105776112 isoform X5
TrEMBL	A0A0D2UKE2	0.0	A0A0D2UKE2_GOSRA; Uncharacterized protein
STRING	Gorai.011G008700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	3e-13	TRF-like 5

Link Out ? help Back to Top
Phytozome	Gorai.011G008700.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]