PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G008700.2 | ||||||||
Common Name | B456_011G008700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 750aa MW: 82082.6 Da PI: 7.428 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.9 | 3.4e-11 | 702 | 747 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 WT eE++ l+++ +++G+ Wk+I + k+Rt ++k++w+++ Gorai.011G008700.2 702 WTHEEEQALIKGYREYGTQ-WKLILESYRdilKKRTQVDLKDKWRNL 747 *****************99.*************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.223 | 694 | 749 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0016 | 698 | 749 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.99E-11 | 701 | 747 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.6E-9 | 702 | 748 | No hit | No description |
CDD | cd11660 | 3.06E-16 | 702 | 749 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-10 | 702 | 747 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MGDSFPLFND RDPAVLSTLK RYLSQPNNND EDNGDGYATF CFHYKGAILR SIEQRTGNST 60 VTDAVLDSLI LIENLDRRRG VLPSESMKAA FCAVAVHCTV SCLPVSWDNY FDAFQRIWGL 120 RIKSLEESGK SDLISSELVQ WGTVIEAGLW DLETSQRLSS VNTRGKALLR IKGYLEEAFR 180 SMSPALSRLA SASTTEPTVD HAASANPHPS TDEGNMDNVV SASAQVPSSP HPCIDERNIP 240 SSPHPCSDEG KMGNVVSASA EASPSPHPCA DKGNVDNVIS SSAQVPSSPH PCTNKKKKIR 300 RASFQARHKP RPRCKQPRGV VITDMEEDQP LCTKNGTPSS FEVNGCLQVA SKTRSAALLD 360 GVTDSPSEAL EVLESVALVM AGKNFHPKGS VEDSNKDKGD PTTSFYPTTH HCTEKGKQIL 420 MVNSQTSGNP NSSHRHCEGP AATADIEGYR TLSTPDIDKL RDALTSSIAD LTATVADPLP 480 KALEVAATLV SFMEAAKSLS TDGAEGDVRK EKGVPAAPMN CNFEQAQAER RAPDKAIRED 540 QDKMARSVPA SSVGHSVEPS QAKEGNETFS RPKKVPKRNL MKRNDAAHTH ERRAPYEGIR 600 EDYNKVDGSV PAPSVNHTAE PSHSKEGNEA VIRPKKVRKR SIMERNDTAH ASEWEDSIDG 660 SDGGTSGCSN RCTLPSPKTN HVSPLKESEP QKQKNRRKTN WWTHEEEQAL IKGYREYGTQ 720 WKLILESYRD ILKKRTQVDL KDKWRNLSK* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00052 | PBM | Transfer from AT1G15720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454054.1 | 0.0 | PREDICTED: uncharacterized protein LOC105776112 isoform X1 | ||||
TrEMBL | A0A0D2VGL2 | 0.0 | A0A0D2VGL2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G008700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 3e-13 | TRF-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G008700.2 |
Publications ? help Back to Top | |||
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