PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G005300.3

Common Name

B456_011G005300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LSD

Protein Properties

Length: 171aa MW: 17807.7 Da PI: 8.3889

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G005300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.3	1.1e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr L YPrGA++V+CalC+tV Gorai.011G005300.3 7 CSGCRSNLLYPRGATNVCCALCNTV 31 ************************9 PP
2	zf-LSD1	39	1.3e-12	46	69	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggCrtlL+Y rG +sVRC++C+t Gorai.011G005300.3 46 CGGCRTLLMYARGGTSVRCSCCHT 69 ***********************8 PP
3	zf-LSD1	49	9.6e-16	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V Gorai.011G005300.3 84 CGHCRTTLMYPYGAPSVKCAICQYV 108 ***********************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	9.1E-13	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-10	7	31	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	5.7E-15	43	72	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.4E-10	46	69	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.8E-13	81	111	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.4E-14	84	108	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MQSQIVCSGC RSNLLYPRGA TNVCCALCNT VTQVPLPGMD MGQLICGGCR TLLMYARGGT 60 SVRCSCCHTL NLAPAPNQIA HINCGHCRTT LMYPYGAPSV KCAICQYVTN VGTGNARAPF 120 CVSRPNQIAS AGTVPSTSTS QTVVVENPMS VDESGKLVSN VVVGITTDKK *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, roots, rosette leaves, stems, inflorescences and flowers. {ECO:0000269\|PubMed:20456049}.

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269\|PubMed:10550898, ECO:0000269\|PubMed:11595797, ECO:0000269\|PubMed:11844114, ECO:0000269\|PubMed:12732715, ECO:0000269\|PubMed:15347794, ECO:0000269\|PubMed:16957775, ECO:0000269\|PubMed:18055613, ECO:0000269\|PubMed:18790826, ECO:0000269\|PubMed:20456049, ECO:0000269\|PubMed:21097903}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By methyl viologen. {ECO:0000269\|PubMed:20456049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454254.1	1e-121	PREDICTED: protein LSD1-like
Refseq	XP_012454255.1	1e-121	PREDICTED: protein LSD1-like
Swissprot	P94077	3e-70	LSD1_ARATH; Protein LSD1
TrEMBL	A0A0D2VGH5	1e-119	A0A0D2VGH5_GOSRA; Uncharacterized protein
STRING	Gorai.011G005300.1	1e-120	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	1e-69	LSD family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G005300.3

Publications ? help Back to Top
Spedaletti V, et al. Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana. Biochemistry, 2008. 47(17): p. 4936-47 [PMID:18393445] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties. Plant Cell Rep., 2016. 35(3): p. 527-39 [PMID:26754794] Czarnocka W, et al. The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator. Plant Cell Environ., 2017. 40(11): p. 2644-2662 [PMID:28555890] Bernacki MJ, et al. LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana. Physiol Plant, 2019. 165(2): p. 369-382 [PMID:30461017]