PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G004200.2 | ||||||||
Common Name | B456_011G004200, LOC105776758 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 852aa MW: 93468.5 Da PI: 6.2495 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1e-18 | 19 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Gorai.011G004200.2 19 KYVRYTPEQVEALERVYNECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77 6789*****************************************************97 PP | |||||||
2 | START | 171.4 | 5.7e-54 | 169 | 376 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l i ++ g+ Gorai.011G004200.2 169 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCIDVLSIIPTAngGT 258 7899******************************************************.8888888888****************9999** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ + s+vRae+lpSg+li+p+++g+s +++v+hvdl+ +++ Gorai.011G004200.2 259 IELIYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppTTSFVRAEMLPSGFLIRPCDGGGSIIHIVDHVDLDVWSV 349 ********************************************99999999*************************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 178 hwllrslvksglaegaktwvatlqrqc 204 +++lr+l++s+ + ++k++ a+l++ + Gorai.011G004200.2 350 PEVLRPLYESSKILAQKMTIAALRHIR 376 **********************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 4 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.758 | 14 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-15 | 16 | 82 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.7E-16 | 19 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.26E-17 | 19 | 79 | No hit | No description |
SuperFamily | SSF46689 | 1.75E-16 | 19 | 81 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.80E-6 | 71 | 110 | No hit | No description |
PROSITE profile | PS50848 | 26.735 | 159 | 387 | IPR002913 | START domain |
CDD | cd08875 | 3.14E-66 | 163 | 379 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 4.1E-23 | 168 | 373 | IPR023393 | START-like domain |
SMART | SM00234 | 7.1E-51 | 168 | 378 | IPR002913 | START domain |
Pfam | PF01852 | 1.5E-51 | 169 | 376 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.71E-38 | 169 | 380 | No hit | No description |
SuperFamily | SSF55961 | 7.55E-6 | 416 | 501 | No hit | No description |
SuperFamily | SSF55961 | 7.55E-6 | 529 | 602 | No hit | No description |
Pfam | PF08670 | 5.9E-49 | 703 | 850 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 852 aa Download sequence Send to blast |
MALSMHKESL NNKQMDSSKY VRYTPEQVEA LERVYNECPK PSSLRRQQLI RECPILSNIE 60 PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS HLVYENGYMK 120 QQLQTASVTT TDNNSCESVV VSGQHQQQQN PTPRHPQRDA NNPAGLLTIA EETLAEFLSK 180 ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGVAARACGL VSLEPTKVAE ILKDRPSWYR 240 DCRCIDVLSI IPTANGGTIE LIYMQTYAPT TLAAARDFWT LRYTTSLEDG SLVICERSLT 300 SSTGGPTGPP TTSFVRAEML PSGFLIRPCD GGGSIIHIVD HVDLDVWSVP EVLRPLYESS 360 KILAQKMTIA ALRHIRQIAQ ETNGEIQYGG GRQPAVLRTF SQRLCRGFND AVNGFVDDGW 420 SLMGSDGVED VTIMINSSPG KFFGSQYNTS MVPSFGGGVL CAKASMLLQS VPPALLVRFL 480 REHRSEWADY GIDTYSAACL KPNPYTVPCA RPSGFPSSQV ILPLAHTVEH EEFLEVVRLE 540 GQAFTPEDVA LARDMYLLQL CSGIDENAVG ACAQLVFAPI DESFADNAPL LPSGFRVIPL 600 DSKPDGPGAA RTLDLASTLE VGPGSNRSTG DGEPNSYNLR SVLTIAFQFT FENHLRDDVA 660 SMARQYVRSV VGSVQRVAMA IAPSRISPGL GPKSLPGSPE ALTLARWICR SYRIHTGGEL 720 LRADSQSGDT LLKQLWNHSD AIMCCSLKTN ASPVFTFANQ AGLDMLETTL VALQDIMLDK 780 ILDEAGRKSL CAEFSKIMQQ GFAHLPAGIC VSSMGRPVSY EQAIVWKVVD DDNDDAANHC 840 LGLMFVNWSF V* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the youngest stages of ovule development, predominantly to the adaxial side of the ovule primordium. Later, expression becomes restricted to a region in the distal chalaza. When the integuments initiate, expressed in the inner integument, with highest expression in the inner layer of the inner integument. Expressed in the vegetative shoot apical meristem (SAM) and initially throughout the presumptive cotyledons. At the globular stage, just before cotyledon outgrowth, expressed at high levels in cotyledon adaxial domains. Expression is lost from the SAM of torpedo stage embryos but is regained late in embryogenesis, extending to young primordia after germination, and becoming progressively restricted to the adaxial domain and the vasculature. Preferentially expressed in the adaxial domain of the developing leaf. Expressed throughout the plastochron 0 (P0) leaf primordium and expression increases in P1 to become preferentially localized to the adaxial leaf domain by the P2 stage (polar expression). {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the center of the meristem and on the adaxial side of the leaves. {ECO:0000269|PubMed:11395776}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455108.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X2 | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | A0A0D2UM72 | 0.0 | A0A0D2UM72_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G004200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G004200.2 |
Entrez Gene | 105776758 |