PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G001500.4
Common NameB456_011G001500, LOC105776298
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 326aa    MW: 36562.1 Da    PI: 5.2201
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G001500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.8e-34119173155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl
  Gorai.011G001500.4 119 KPRMRWTPELHERFVEAVNKLHGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 173
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.732116176IPR017930Myb domain
SuperFamilySSF466892.15E-18117173IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-25119174IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.0E-31119174IPR009057Homeodomain-like
PfamPF002495.6E-10121172IPR001005SANT/Myb domain
PfamPF143791.1E-22210257IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MFSEDLNNPY NEGHSEIIMK DFLNLPADAS SDGCFYGMHC ESDDFGITTE QLELQFLSDE  60
LDIAITDHGE NPRLDEIYET CPPSSAKPTV ELKCNQNTNS VSPTIDGPAM SGAAAAVLKP  120
RMRWTPELHE RFVEAVNKLH GPEKATPKGV LKLMNVEGLT IYHVKSHLQK YRLAKYMPEK  180
KEERKTSSSS EEKKPASSSN ESDGKKRGGM HITEALRMQM EVQKQLHEQL ELQRSLQLRI  240
EEHARYLQKM LEEQQKAGNA LIPNSNSELP SKIASETEPC ESKTESPTSL PSKHKAPNVE  300
DCKLKSSPKR LRMDEAEAEV ENPEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-26119176259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-26119176259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-26119176259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-26119176259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-26119176259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-26119176259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-26119176259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-26119176259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.12780.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488069450.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454324.10.0PREDICTED: uncharacterized protein LOC105776298
RefseqXP_012454325.10.0PREDICTED: uncharacterized protein LOC105776298
SwissprotQ949U21e-109PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A0D2REP40.0A0A0D2REP4_GOSRA; Uncharacterized protein
TrEMBLA0A0D2VG790.0A0A0D2VG79_GOSRA; Uncharacterized protein
STRINGGorai.011G001500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.27e-85G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]