PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G256900.6 | ||||||||
Common Name | B456_010G256900, LOC105772803 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 1721aa MW: 195024 Da PI: 5.0679 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4.2e-19 | 29 | 84 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR kekk Gorai.010G256900.6 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-19 | 13 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-17 | 17 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.795 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-19 | 27 | 89 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.6E-17 | 29 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.31E-14 | 30 | 86 | No hit | No description |
PROSITE profile | PS50827 | 16.679 | 511 | 570 | IPR018501 | DDT domain |
SMART | SM00571 | 2.0E-21 | 511 | 570 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.8E-16 | 512 | 567 | IPR018501 | DDT domain |
Pfam | PF05066 | 4.1E-15 | 693 | 760 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 3.0E-8 | 912 | 956 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 8.0E-13 | 1097 | 1169 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1721 aa Download sequence Send to blast |
MEAGSEGENN QISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDNPTKK QRKGAALPPE SPVDELRAVP GPDYGSGSGS 120 GSSPYMDTRK LGGSSSRGMM EDAPTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GIEFDPLPPD AFGAIPEPHN RTGHPYESKV YERHDGRSSK AAARAFHEYQ FLPEHSSIRS 240 DAYGLVIQSH FHESPVSGSR GRATSFVHGE EPLSRIHGIQ ERESFTNGRN APTICNPVLG 300 SEDSYMLSAE QTLNNDAEPR IDRKRKSDEN RIAREVEAHE NRIRKELEKL EHKRRKSEER 360 MRKEMERHER ERRKEEERLM REKQREEERT QREQKREMER RQKFLQKEYL RAEKKRQKEE 420 LRREREEERR RVAREKATAR KIAKESMDLL EDEQLELMEL AAARKGMHSI IHLDHDTLQN 480 LESFRDSLSV FPPKSVQLKR PFDIQPWIDS EENVGNLLMA WRFLITFADI LRLWPFTLDE 540 FVQAFHDYDS RLLGEIHVAL LRSIIKDIED VARTPATGLG MNQYCAANPE GGHLQIVEGA 600 YSWGFDIRNW QHHLNPLTWP EIFRQLAISA GFGPQLKKQN ATWTYTGDND EGKGCTDVVS 660 TLRNGSAAEN AFALMREKGL LLPRRSRHRL TPGTVKFAAF HVLSLEGSKG LTVLELADKI 720 QKSGLRDLTT SKTPEASISV ALTRDAKLFE RIAPSTYCVR PAYRKDPADA EAILATARKK 780 IRQFENGFLG AEDADEVERD EVERDDVERD EDSECDVDED PEVDDIATPS NANKDADYPK 840 DEVNTCLGSK KVLASADDDL DVPAEFDKDF PSFPSNTVKV DNDPSNTGQH VAGEENGTGN 900 PDQQNIEIDE SKSGESWIQG LSEGEYSHLS VEERLNALVA LIGIANEGNS IRAVLEDRLE 960 AANALKKQMW AEAQLDKSRL KEECIIKMDF PPVMGIKTEA QLPNSAVEGS RSPFPVADNK 1020 IDEASPSIPE DQKPLLCSQN VQNDLNSYPA ERALVLQDAS MGPDNFSAQQ HGYASKRSRS 1080 QLKSYIAHRA EEMYVYRSLP LGQDRRRNRY WQFVASASKN DPCSGRIFVE LHDGNWRLID 1140 SEEAFDALLA SLDVRGIRES HLRIMLQKIE SSFKENVRRN LHSARAMGQS GSSSENEVSE 1200 IDSSPDFTGS YDSPRSGICG LNSDALETLP AFKIQLGTNE NERKSAMKRY QDFQRWMWNE 1260 CCNSSTLCAM KYEKKRSTQL LAVCDTCLGS HMPEDVHCSY CHQTFRAFNN NFSFYEHEIL 1320 CKENRKLDNK DKHTLDSSLP MGINLLKSFC ALVEVSIPPE ALDSMWTEGQ RKMWGRKLNA 1380 SSSANELLKL LTQLESAIKR DYLSSNFETT RELLGSSFQS ENDSSTDSVL PWIPQITPAV 1440 ALRLLELDSS IMYVKQEKVE PPENREARAS YIKLPSRTTL FIKNKELELK ELDQDGPMKE 1500 ENFADLSNSK RSSYKRGRGA REQGSGRKWQ RKASGSKSDI GKQSARENNN LSFHLKQQSQ 1560 RTGQSSGRGR RTVRKRAERR VANSTIVTQM GDMVKPKSNT VSLRDLDEEW RTERFGMVET 1620 VNPPDSNSTE EESDDNGQGE GYEQGNWELD LNGASNGWNR EPIEASYEDD DAYEDDNGFE 1680 QMVEEESEGD LEMSDASDDV PNETRNDDGS DSADSEDYSD * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 84 | RRLKEKKD |
2 | 352 | 373 | KRRKSEERMRKEMERHERERRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582386 | 1e-101 | JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012449712.1 | 0.0 | PREDICTED: uncharacterized protein LOC105772803 isoform X3 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A0D2SYY0 | 0.0 | A0A0D2SYY0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G256900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G256900.6 |
Entrez Gene | 105772803 |
Publications ? help Back to Top | |||
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