PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G256900.6

Common Name

B456_010G256900, LOC105772803

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1721aa MW: 195024 Da PI: 5.0679

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G256900.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4.2e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR kekk Gorai.010G256900.6 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-19	13	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-17	17	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.795	25	85	IPR001356	Homeobox domain
SMART	SM00389	9.5E-19	27	89	IPR001356	Homeobox domain
Pfam	PF00046	9.6E-17	29	84	IPR001356	Homeobox domain
CDD	cd00086	3.31E-14	30	86	No hit	No description
PROSITE profile	PS50827	16.679	511	570	IPR018501	DDT domain
SMART	SM00571	2.0E-21	511	570	IPR018501	DDT domain
Pfam	PF02791	1.8E-16	512	567	IPR018501	DDT domain
Pfam	PF05066	4.1E-15	693	760	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.0E-8	912	956	IPR028942	WHIM1 domain
Pfam	PF15613	8.0E-13	1097	1169	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1721 aa Download sequence Send to blast
MEAGSEGENN QISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDNPTKK QRKGAALPPE SPVDELRAVP GPDYGSGSGS 120 GSSPYMDTRK LGGSSSRGMM EDAPTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GIEFDPLPPD AFGAIPEPHN RTGHPYESKV YERHDGRSSK AAARAFHEYQ FLPEHSSIRS 240 DAYGLVIQSH FHESPVSGSR GRATSFVHGE EPLSRIHGIQ ERESFTNGRN APTICNPVLG 300 SEDSYMLSAE QTLNNDAEPR IDRKRKSDEN RIAREVEAHE NRIRKELEKL EHKRRKSEER 360 MRKEMERHER ERRKEEERLM REKQREEERT QREQKREMER RQKFLQKEYL RAEKKRQKEE 420 LRREREEERR RVAREKATAR KIAKESMDLL EDEQLELMEL AAARKGMHSI IHLDHDTLQN 480 LESFRDSLSV FPPKSVQLKR PFDIQPWIDS EENVGNLLMA WRFLITFADI LRLWPFTLDE 540 FVQAFHDYDS RLLGEIHVAL LRSIIKDIED VARTPATGLG MNQYCAANPE GGHLQIVEGA 600 YSWGFDIRNW QHHLNPLTWP EIFRQLAISA GFGPQLKKQN ATWTYTGDND EGKGCTDVVS 660 TLRNGSAAEN AFALMREKGL LLPRRSRHRL TPGTVKFAAF HVLSLEGSKG LTVLELADKI 720 QKSGLRDLTT SKTPEASISV ALTRDAKLFE RIAPSTYCVR PAYRKDPADA EAILATARKK 780 IRQFENGFLG AEDADEVERD EVERDDVERD EDSECDVDED PEVDDIATPS NANKDADYPK 840 DEVNTCLGSK KVLASADDDL DVPAEFDKDF PSFPSNTVKV DNDPSNTGQH VAGEENGTGN 900 PDQQNIEIDE SKSGESWIQG LSEGEYSHLS VEERLNALVA LIGIANEGNS IRAVLEDRLE 960 AANALKKQMW AEAQLDKSRL KEECIIKMDF PPVMGIKTEA QLPNSAVEGS RSPFPVADNK 1020 IDEASPSIPE DQKPLLCSQN VQNDLNSYPA ERALVLQDAS MGPDNFSAQQ HGYASKRSRS 1080 QLKSYIAHRA EEMYVYRSLP LGQDRRRNRY WQFVASASKN DPCSGRIFVE LHDGNWRLID 1140 SEEAFDALLA SLDVRGIRES HLRIMLQKIE SSFKENVRRN LHSARAMGQS GSSSENEVSE 1200 IDSSPDFTGS YDSPRSGICG LNSDALETLP AFKIQLGTNE NERKSAMKRY QDFQRWMWNE 1260 CCNSSTLCAM KYEKKRSTQL LAVCDTCLGS HMPEDVHCSY CHQTFRAFNN NFSFYEHEIL 1320 CKENRKLDNK DKHTLDSSLP MGINLLKSFC ALVEVSIPPE ALDSMWTEGQ RKMWGRKLNA 1380 SSSANELLKL LTQLESAIKR DYLSSNFETT RELLGSSFQS ENDSSTDSVL PWIPQITPAV 1440 ALRLLELDSS IMYVKQEKVE PPENREARAS YIKLPSRTTL FIKNKELELK ELDQDGPMKE 1500 ENFADLSNSK RSSYKRGRGA REQGSGRKWQ RKASGSKSDI GKQSARENNN LSFHLKQQSQ 1560 RTGQSSGRGR RTVRKRAERR VANSTIVTQM GDMVKPKSNT VSLRDLDEEW RTERFGMVET 1620 VNPPDSNSTE EESDDNGQGE GYEQGNWELD LNGASNGWNR EPIEASYEDD DAYEDDNGFE 1680 QMVEEESEGD LEMSDASDDV PNETRNDDGS DSADSEDYSD *

Sequence ? help Back to Top

Protein Sequence Length: 1721 aa Download sequence Send to blast

MEAGSEGENN QISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL  60
SEKLGLSDRQ LQMWFCHRRL KEKKDNPTKK QRKGAALPPE SPVDELRAVP GPDYGSGSGS  120
GSSPYMDTRK LGGSSSRGMM EDAPTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GIEFDPLPPD AFGAIPEPHN RTGHPYESKV YERHDGRSSK AAARAFHEYQ FLPEHSSIRS  240
DAYGLVIQSH FHESPVSGSR GRATSFVHGE EPLSRIHGIQ ERESFTNGRN APTICNPVLG  300
SEDSYMLSAE QTLNNDAEPR IDRKRKSDEN RIAREVEAHE NRIRKELEKL EHKRRKSEER  360
MRKEMERHER ERRKEEERLM REKQREEERT QREQKREMER RQKFLQKEYL RAEKKRQKEE  420
LRREREEERR RVAREKATAR KIAKESMDLL EDEQLELMEL AAARKGMHSI IHLDHDTLQN  480
LESFRDSLSV FPPKSVQLKR PFDIQPWIDS EENVGNLLMA WRFLITFADI LRLWPFTLDE  540
FVQAFHDYDS RLLGEIHVAL LRSIIKDIED VARTPATGLG MNQYCAANPE GGHLQIVEGA  600
YSWGFDIRNW QHHLNPLTWP EIFRQLAISA GFGPQLKKQN ATWTYTGDND EGKGCTDVVS  660
TLRNGSAAEN AFALMREKGL LLPRRSRHRL TPGTVKFAAF HVLSLEGSKG LTVLELADKI  720
QKSGLRDLTT SKTPEASISV ALTRDAKLFE RIAPSTYCVR PAYRKDPADA EAILATARKK  780
IRQFENGFLG AEDADEVERD EVERDDVERD EDSECDVDED PEVDDIATPS NANKDADYPK  840
DEVNTCLGSK KVLASADDDL DVPAEFDKDF PSFPSNTVKV DNDPSNTGQH VAGEENGTGN  900
PDQQNIEIDE SKSGESWIQG LSEGEYSHLS VEERLNALVA LIGIANEGNS IRAVLEDRLE  960
AANALKKQMW AEAQLDKSRL KEECIIKMDF PPVMGIKTEA QLPNSAVEGS RSPFPVADNK  1020
IDEASPSIPE DQKPLLCSQN VQNDLNSYPA ERALVLQDAS MGPDNFSAQQ HGYASKRSRS  1080
QLKSYIAHRA EEMYVYRSLP LGQDRRRNRY WQFVASASKN DPCSGRIFVE LHDGNWRLID  1140
SEEAFDALLA SLDVRGIRES HLRIMLQKIE SSFKENVRRN LHSARAMGQS GSSSENEVSE  1200
IDSSPDFTGS YDSPRSGICG LNSDALETLP AFKIQLGTNE NERKSAMKRY QDFQRWMWNE  1260
CCNSSTLCAM KYEKKRSTQL LAVCDTCLGS HMPEDVHCSY CHQTFRAFNN NFSFYEHEIL  1320
CKENRKLDNK DKHTLDSSLP MGINLLKSFC ALVEVSIPPE ALDSMWTEGQ RKMWGRKLNA  1380
SSSANELLKL LTQLESAIKR DYLSSNFETT RELLGSSFQS ENDSSTDSVL PWIPQITPAV  1440
ALRLLELDSS IMYVKQEKVE PPENREARAS YIKLPSRTTL FIKNKELELK ELDQDGPMKE  1500
ENFADLSNSK RSSYKRGRGA REQGSGRKWQ RKASGSKSDI GKQSARENNN LSFHLKQQSQ  1560
RTGQSSGRGR RTVRKRAERR VANSTIVTQM GDMVKPKSNT VSLRDLDEEW RTERFGMVET  1620
VNPPDSNSTE EESDDNGQGE GYEQGNWELD LNGASNGWNR EPIEASYEDD DAYEDDNGFE  1680
QMVEEESEGD LEMSDASDDV PNETRNDDGS DSADSEDYSD *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	352	373	KRRKSEERMRKEMERHERERRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-101	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449712.1	0.0	PREDICTED: uncharacterized protein LOC105772803 isoform X3
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D2SYY0	0.0	A0A0D2SYY0_GOSRA; Uncharacterized protein
STRING	Gorai.010G256900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Gorai.010G256900.6
Entrez Gene	105772803

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]