PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G256900.3 | ||||||||
Common Name | B456_010G256900, LOC105772803 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 1725aa MW: 195410 Da PI: 5.0679 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4.2e-19 | 29 | 84 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR kekk Gorai.010G256900.3 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-19 | 13 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-17 | 17 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.795 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-19 | 27 | 89 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.6E-17 | 29 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.22E-14 | 30 | 86 | No hit | No description |
PROSITE profile | PS50827 | 16.679 | 515 | 574 | IPR018501 | DDT domain |
SMART | SM00571 | 2.0E-21 | 515 | 574 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.8E-16 | 516 | 571 | IPR018501 | DDT domain |
Pfam | PF05066 | 4.1E-15 | 697 | 764 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 3.0E-8 | 916 | 960 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 8.0E-13 | 1101 | 1173 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1725 aa Download sequence Send to blast |
MEAGSEGENN QISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDNPTKK QRKGAALPPE SPVDELRAVP GPDYGSGSGS 120 GSSPYMDTRK LGGSSSRGMM EDAPTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GIEFDPLPPD AFGAIPEPHN RTGHPYESKV YERHDGRSSK AAARAFHEYQ FLPEHSSIRS 240 DAYGLVIQSH FHESPVSGSR GRATSFVHGE EPLSRIHGIQ ERESFTNGRN APTICNPVLG 300 SEDSYMLSAE QTLNNDAEPR IDRKRKVSSL SDENRIAREV EAHENRIRKE LEKLEHKRRK 360 SEERMRKEME RHERERRKEE ERLMREKQRE EERTQREQKR EMERRQKFLQ KEYLRAEKKR 420 QKEELRRERE EERRRVAREK ATARKIAKES MDLLEDEQLE LMELAAARKG MHSIIHLDHD 480 TLQNLESFRD SLSVFPPKSV QLKRPFDIQP WIDSEENVGN LLMAWRFLIT FADILRLWPF 540 TLDEFVQAFH DYDSRLLGEI HVALLRSIIK DIEDVARTPA TGLGMNQYCA ANPEGGHLQI 600 VEGAYSWGFD IRNWQHHLNP LTWPEIFRQL AISAGFGPQL KKQNATWTYT GDNDEGKGCT 660 DVVSTLRNGS AAENAFALMR EKGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL 720 ADKIQKSGLR DLTTSKTPEA SISVALTRDA KLFERIAPST YCVRPAYRKD PADAEAILAT 780 ARKKIRQFEN GFLGAEDADE VERDEVERDD VERDEDSECD VDEDPEVDDI ATPSNANKDA 840 DYPKDEVNTC LGSKKVLASA DDDLDVPAEF DKDFPSFPSN TVKVDNDPSN TGQHVAGEEN 900 GTGNPDQQNI EIDESKSGES WIQGLSEGEY SHLSVEERLN ALVALIGIAN EGNSIRAVLE 960 DRLEAANALK KQMWAEAQLD KSRLKEECII KMDFPPVMGI KTEAQLPNSA VEGSRSPFPV 1020 ADNKIDEASP SIPEDQKPLL CSQNVQNDLN SYPAERALVL QDASMGPDNF SAQQHGYASK 1080 RSRSQLKSYI AHRAEEMYVY RSLPLGQDRR RNRYWQFVAS ASKNDPCSGR IFVELHDGNW 1140 RLIDSEEAFD ALLASLDVRG IRESHLRIML QKIESSFKEN VRRNLHSARA MGQSGSSSEN 1200 EVSEIDSSPD FTGSYDSPRS GICGLNSDAL ETLPAFKIQL GTNENERKSA MKRYQDFQRW 1260 MWNECCNSST LCAMKYEKKR STQLLAVCDT CLGSHMPEDV HCSYCHQTFR AFNNNFSFYE 1320 HEILCKENRK LDNKDKHTLD SSLPMGINLL KSFCALVEVS IPPEALDSMW TEGQRKMWGR 1380 KLNASSSANE LLKLLTQLES AIKRDYLSSN FETTRELLGS SFQSENDSST DSVLPWIPQI 1440 TPAVALRLLE LDSSIMYVKQ EKVEPPENRE ARASYIKLPS RTTLFIKNKE LELKELDQDG 1500 PMKEENFADL SNSKRSSYKR GRGAREQGSG RKWQRKASGS KSDIGKQSAR ENNNLSFHLK 1560 QQSQRTGQSS GRGRRTVRKR AERRVANSTI VTQMGDMVKP KSNTVSLRDL DEEWRTERFG 1620 MVETVNPPDS NSTEEESDDN GQGEGYEQGN WELDLNGASN GWNREPIEAS YEDDDAYEDD 1680 NGFEQMVEEE SEGDLEMSDA SDDVPNETRN DDGSDSADSE DYSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 84 | RRLKEKKD |
2 | 356 | 377 | KRRKSEERMRKEMERHERERRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582386 | 1e-101 | JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012449711.1 | 0.0 | PREDICTED: uncharacterized protein LOC105772803 isoform X2 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A0D2UIY8 | 0.0 | A0A0D2UIY8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G256900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G256900.3 |
Entrez Gene | 105772803 |
Publications ? help Back to Top | |||
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