PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G256900.2

Common Name

B456_010G256900, LOC105772803

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1725aa MW: 195410 Da PI: 5.0679

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G256900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4.2e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR kekk Gorai.010G256900.2 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-19	13	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-17	17	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.795	25	85	IPR001356	Homeobox domain
SMART	SM00389	9.5E-19	27	89	IPR001356	Homeobox domain
Pfam	PF00046	9.6E-17	29	84	IPR001356	Homeobox domain
CDD	cd00086	3.22E-14	30	86	No hit	No description
PROSITE profile	PS50827	16.679	515	574	IPR018501	DDT domain
SMART	SM00571	2.0E-21	515	574	IPR018501	DDT domain
Pfam	PF02791	1.8E-16	516	571	IPR018501	DDT domain
Pfam	PF05066	4.1E-15	697	764	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.0E-8	916	960	IPR028942	WHIM1 domain
Pfam	PF15613	8.0E-13	1101	1173	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1725 aa Download sequence Send to blast
MEAGSEGENN QISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDNPTKK QRKGAALPPE SPVDELRAVP GPDYGSGSGS 120 GSSPYMDTRK LGGSSSRGMM EDAPTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GIEFDPLPPD AFGAIPEPHN RTGHPYESKV YERHDGRSSK AAARAFHEYQ FLPEHSSIRS 240 DAYGLVIQSH FHESPVSGSR GRATSFVHGE EPLSRIHGIQ ERESFTNGRN APTICNPVLG 300 SEDSYMLSAE QTLNNDAEPR IDRKRKVSSL SDENRIAREV EAHENRIRKE LEKLEHKRRK 360 SEERMRKEME RHERERRKEE ERLMREKQRE EERTQREQKR EMERRQKFLQ KEYLRAEKKR 420 QKEELRRERE EERRRVAREK ATARKIAKES MDLLEDEQLE LMELAAARKG MHSIIHLDHD 480 TLQNLESFRD SLSVFPPKSV QLKRPFDIQP WIDSEENVGN LLMAWRFLIT FADILRLWPF 540 TLDEFVQAFH DYDSRLLGEI HVALLRSIIK DIEDVARTPA TGLGMNQYCA ANPEGGHLQI 600 VEGAYSWGFD IRNWQHHLNP LTWPEIFRQL AISAGFGPQL KKQNATWTYT GDNDEGKGCT 660 DVVSTLRNGS AAENAFALMR EKGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL 720 ADKIQKSGLR DLTTSKTPEA SISVALTRDA KLFERIAPST YCVRPAYRKD PADAEAILAT 780 ARKKIRQFEN GFLGAEDADE VERDEVERDD VERDEDSECD VDEDPEVDDI ATPSNANKDA 840 DYPKDEVNTC LGSKKVLASA DDDLDVPAEF DKDFPSFPSN TVKVDNDPSN TGQHVAGEEN 900 GTGNPDQQNI EIDESKSGES WIQGLSEGEY SHLSVEERLN ALVALIGIAN EGNSIRAVLE 960 DRLEAANALK KQMWAEAQLD KSRLKEECII KMDFPPVMGI KTEAQLPNSA VEGSRSPFPV 1020 ADNKIDEASP SIPEDQKPLL CSQNVQNDLN SYPAERALVL QDASMGPDNF SAQQHGYASK 1080 RSRSQLKSYI AHRAEEMYVY RSLPLGQDRR RNRYWQFVAS ASKNDPCSGR IFVELHDGNW 1140 RLIDSEEAFD ALLASLDVRG IRESHLRIML QKIESSFKEN VRRNLHSARA MGQSGSSSEN 1200 EVSEIDSSPD FTGSYDSPRS GICGLNSDAL ETLPAFKIQL GTNENERKSA MKRYQDFQRW 1260 MWNECCNSST LCAMKYEKKR STQLLAVCDT CLGSHMPEDV HCSYCHQTFR AFNNNFSFYE 1320 HEILCKENRK LDNKDKHTLD SSLPMGINLL KSFCALVEVS IPPEALDSMW TEGQRKMWGR 1380 KLNASSSANE LLKLLTQLES AIKRDYLSSN FETTRELLGS SFQSENDSST DSVLPWIPQI 1440 TPAVALRLLE LDSSIMYVKQ EKVEPPENRE ARASYIKLPS RTTLFIKNKE LELKELDQDG 1500 PMKEENFADL SNSKRSSYKR GRGAREQGSG RKWQRKASGS KSDIGKQSAR ENNNLSFHLK 1560 QQSQRTGQSS GRGRRTVRKR AERRVANSTI VTQMGDMVKP KSNTVSLRDL DEEWRTERFG 1620 MVETVNPPDS NSTEEESDDN GQGEGYEQGN WELDLNGASN GWNREPIEAS YEDDDAYEDD 1680 NGFEQMVEEE SEGDLEMSDA SDDVPNETRN DDGSDSADSE DYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1725 aa Download sequence Send to blast

MEAGSEGENN QISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL  60
SEKLGLSDRQ LQMWFCHRRL KEKKDNPTKK QRKGAALPPE SPVDELRAVP GPDYGSGSGS  120
GSSPYMDTRK LGGSSSRGMM EDAPTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GIEFDPLPPD AFGAIPEPHN RTGHPYESKV YERHDGRSSK AAARAFHEYQ FLPEHSSIRS  240
DAYGLVIQSH FHESPVSGSR GRATSFVHGE EPLSRIHGIQ ERESFTNGRN APTICNPVLG  300
SEDSYMLSAE QTLNNDAEPR IDRKRKVSSL SDENRIAREV EAHENRIRKE LEKLEHKRRK  360
SEERMRKEME RHERERRKEE ERLMREKQRE EERTQREQKR EMERRQKFLQ KEYLRAEKKR  420
QKEELRRERE EERRRVAREK ATARKIAKES MDLLEDEQLE LMELAAARKG MHSIIHLDHD  480
TLQNLESFRD SLSVFPPKSV QLKRPFDIQP WIDSEENVGN LLMAWRFLIT FADILRLWPF  540
TLDEFVQAFH DYDSRLLGEI HVALLRSIIK DIEDVARTPA TGLGMNQYCA ANPEGGHLQI  600
VEGAYSWGFD IRNWQHHLNP LTWPEIFRQL AISAGFGPQL KKQNATWTYT GDNDEGKGCT  660
DVVSTLRNGS AAENAFALMR EKGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL  720
ADKIQKSGLR DLTTSKTPEA SISVALTRDA KLFERIAPST YCVRPAYRKD PADAEAILAT  780
ARKKIRQFEN GFLGAEDADE VERDEVERDD VERDEDSECD VDEDPEVDDI ATPSNANKDA  840
DYPKDEVNTC LGSKKVLASA DDDLDVPAEF DKDFPSFPSN TVKVDNDPSN TGQHVAGEEN  900
GTGNPDQQNI EIDESKSGES WIQGLSEGEY SHLSVEERLN ALVALIGIAN EGNSIRAVLE  960
DRLEAANALK KQMWAEAQLD KSRLKEECII KMDFPPVMGI KTEAQLPNSA VEGSRSPFPV  1020
ADNKIDEASP SIPEDQKPLL CSQNVQNDLN SYPAERALVL QDASMGPDNF SAQQHGYASK  1080
RSRSQLKSYI AHRAEEMYVY RSLPLGQDRR RNRYWQFVAS ASKNDPCSGR IFVELHDGNW  1140
RLIDSEEAFD ALLASLDVRG IRESHLRIML QKIESSFKEN VRRNLHSARA MGQSGSSSEN  1200
EVSEIDSSPD FTGSYDSPRS GICGLNSDAL ETLPAFKIQL GTNENERKSA MKRYQDFQRW  1260
MWNECCNSST LCAMKYEKKR STQLLAVCDT CLGSHMPEDV HCSYCHQTFR AFNNNFSFYE  1320
HEILCKENRK LDNKDKHTLD SSLPMGINLL KSFCALVEVS IPPEALDSMW TEGQRKMWGR  1380
KLNASSSANE LLKLLTQLES AIKRDYLSSN FETTRELLGS SFQSENDSST DSVLPWIPQI  1440
TPAVALRLLE LDSSIMYVKQ EKVEPPENRE ARASYIKLPS RTTLFIKNKE LELKELDQDG  1500
PMKEENFADL SNSKRSSYKR GRGAREQGSG RKWQRKASGS KSDIGKQSAR ENNNLSFHLK  1560
QQSQRTGQSS GRGRRTVRKR AERRVANSTI VTQMGDMVKP KSNTVSLRDL DEEWRTERFG  1620
MVETVNPPDS NSTEEESDDN GQGEGYEQGN WELDLNGASN GWNREPIEAS YEDDDAYEDD  1680
NGFEQMVEEE SEGDLEMSDA SDDVPNETRN DDGSDSADSE DYSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	356	377	KRRKSEERMRKEMERHERERRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-101	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449711.1	0.0	PREDICTED: uncharacterized protein LOC105772803 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D2UIY8	0.0	A0A0D2UIY8_GOSRA; Uncharacterized protein
STRING	Gorai.010G256900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Gorai.010G256900.2
Entrez Gene	105772803

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]