PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G256900.1

Common Name

B456_010G256900, LOC105772803

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1748aa MW: 197744 Da PI: 5.0695

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G256900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.3e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR kekk Gorai.010G256900.1 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-19	13	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.85E-17	17	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.795	25	85	IPR001356	Homeobox domain
SMART	SM00389	9.5E-19	27	89	IPR001356	Homeobox domain
Pfam	PF00046	9.8E-17	29	84	IPR001356	Homeobox domain
CDD	cd00086	2.89E-14	30	86	No hit	No description
PROSITE profile	PS50827	16.679	538	597	IPR018501	DDT domain
SMART	SM00571	2.0E-21	538	597	IPR018501	DDT domain
Pfam	PF02791	1.9E-16	539	594	IPR018501	DDT domain
Pfam	PF05066	4.2E-15	720	787	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.1E-8	939	983	IPR028942	WHIM1 domain
Pfam	PF15613	8.1E-13	1124	1196	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1748 aa Download sequence Send to blast
MEAGSEGENN QISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDNPTKK QRKGAALPPE SPVDELRAVP GPDYGSGSGS 120 GSSPYMDTRK LGGSSSRGMM EDAPTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GIEFDPLPPD AFGAIPEPHN RTGHPYESKV YERHDGRSSK AAARAFHEYQ FLPEHSSIRS 240 DAYGLVIQSH FHESPVSGSR GRATSFVHGE EPLSRIHGIQ GQGSRALVLP QQGIIPSSSH 300 VADDSFAERE SFTNGRNAPT ICNPVLGSED SYMLSAEQTL NNDAEPRIDR KRKSDENRIA 360 REVEAHENRI RKELEKLEHK RRKSEERMRK EMERHERERR KEEERLMREK QREEERTQRE 420 QKREMERRQK FLQKEYLRAE KKRQKEELRR EREEERRRVA REKATARKIA KESMDLLEDE 480 QLELMELAAA RKGMHSIIHL DHDTLQNLES FRDSLSVFPP KSVQLKRPFD IQPWIDSEEN 540 VGNLLMAWRF LITFADILRL WPFTLDEFVQ AFHDYDSRLL GEIHVALLRS IIKDIEDVAR 600 TPATGLGMNQ YCAANPEGGH LQIVEGAYSW GFDIRNWQHH LNPLTWPEIF RQLAISAGFG 660 PQLKKQNATW TYTGDNDEGK GCTDVVSTLR NGSAAENAFA LMREKGLLLP RRSRHRLTPG 720 TVKFAAFHVL SLEGSKGLTV LELADKIQKS GLRDLTTSKT PEASISVALT RDAKLFERIA 780 PSTYCVRPAY RKDPADAEAI LATARKKIRQ FENGFLGAED ADEVERDEVE RDDVERDEDS 840 ECDVDEDPEV DDIATPSNAN KDADYPKDEV NTCLGSKKVL ASADDDLDVP AEFDKDFPSF 900 PSNTVKVDND PSNTGQHVAG EENGTGNPDQ QNIEIDESKS GESWIQGLSE GEYSHLSVEE 960 RLNALVALIG IANEGNSIRA VLEDRLEAAN ALKKQMWAEA QLDKSRLKEE CIIKMDFPPV 1020 MGIKTEAQLP NSAVEGSRSP FPVADNKIDE ASPSIPEDQK PLLCSQNVQN DLNSYPAERA 1080 LVLQDASMGP DNFSAQQHGY ASKRSRSQLK SYIAHRAEEM YVYRSLPLGQ DRRRNRYWQF 1140 VASASKNDPC SGRIFVELHD GNWRLIDSEE AFDALLASLD VRGIRESHLR IMLQKIESSF 1200 KENVRRNLHS ARAMGQSGSS SENEVSEIDS SPDFTGSYDS PRSGICGLNS DALETLPAFK 1260 IQLGTNENER KSAMKRYQDF QRWMWNECCN SSTLCAMKYE KKRSTQLLAV CDTCLGSHMP 1320 EDVHCSYCHQ TFRAFNNNFS FYEHEILCKE NRKLDNKDKH TLDSSLPMGI NLLKSFCALV 1380 EVSIPPEALD SMWTEGQRKM WGRKLNASSS ANELLKLLTQ LESAIKRDYL SSNFETTREL 1440 LGSSFQSEND SSTDSVLPWI PQITPAVALR LLELDSSIMY VKQEKVEPPE NREARASYIK 1500 LPSRTTLFIK NKELELKELD QDGPMKEENF ADLSNSKRSS YKRGRGAREQ GSGRKWQRKA 1560 SGSKSDIGKQ SARENNNLSF HLKQQSQRTG QSSGRGRRTV RKRAERRVAN STIVTQMGDM 1620 VKPKSNTVSL RDLDEEWRTE RFGMVETVNP PDSNSTEEES DDNGQGEGYE QGNWELDLNG 1680 ASNGWNREPI EASYEDDDAY EDDNGFEQMV EEESEGDLEM SDASDDVPNE TRNDDGSDSA 1740 DSEDYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1748 aa Download sequence Send to blast

MEAGSEGENN QISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL  60
SEKLGLSDRQ LQMWFCHRRL KEKKDNPTKK QRKGAALPPE SPVDELRAVP GPDYGSGSGS  120
GSSPYMDTRK LGGSSSRGMM EDAPTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GIEFDPLPPD AFGAIPEPHN RTGHPYESKV YERHDGRSSK AAARAFHEYQ FLPEHSSIRS  240
DAYGLVIQSH FHESPVSGSR GRATSFVHGE EPLSRIHGIQ GQGSRALVLP QQGIIPSSSH  300
VADDSFAERE SFTNGRNAPT ICNPVLGSED SYMLSAEQTL NNDAEPRIDR KRKSDENRIA  360
REVEAHENRI RKELEKLEHK RRKSEERMRK EMERHERERR KEEERLMREK QREEERTQRE  420
QKREMERRQK FLQKEYLRAE KKRQKEELRR EREEERRRVA REKATARKIA KESMDLLEDE  480
QLELMELAAA RKGMHSIIHL DHDTLQNLES FRDSLSVFPP KSVQLKRPFD IQPWIDSEEN  540
VGNLLMAWRF LITFADILRL WPFTLDEFVQ AFHDYDSRLL GEIHVALLRS IIKDIEDVAR  600
TPATGLGMNQ YCAANPEGGH LQIVEGAYSW GFDIRNWQHH LNPLTWPEIF RQLAISAGFG  660
PQLKKQNATW TYTGDNDEGK GCTDVVSTLR NGSAAENAFA LMREKGLLLP RRSRHRLTPG  720
TVKFAAFHVL SLEGSKGLTV LELADKIQKS GLRDLTTSKT PEASISVALT RDAKLFERIA  780
PSTYCVRPAY RKDPADAEAI LATARKKIRQ FENGFLGAED ADEVERDEVE RDDVERDEDS  840
ECDVDEDPEV DDIATPSNAN KDADYPKDEV NTCLGSKKVL ASADDDLDVP AEFDKDFPSF  900
PSNTVKVDND PSNTGQHVAG EENGTGNPDQ QNIEIDESKS GESWIQGLSE GEYSHLSVEE  960
RLNALVALIG IANEGNSIRA VLEDRLEAAN ALKKQMWAEA QLDKSRLKEE CIIKMDFPPV  1020
MGIKTEAQLP NSAVEGSRSP FPVADNKIDE ASPSIPEDQK PLLCSQNVQN DLNSYPAERA  1080
LVLQDASMGP DNFSAQQHGY ASKRSRSQLK SYIAHRAEEM YVYRSLPLGQ DRRRNRYWQF  1140
VASASKNDPC SGRIFVELHD GNWRLIDSEE AFDALLASLD VRGIRESHLR IMLQKIESSF  1200
KENVRRNLHS ARAMGQSGSS SENEVSEIDS SPDFTGSYDS PRSGICGLNS DALETLPAFK  1260
IQLGTNENER KSAMKRYQDF QRWMWNECCN SSTLCAMKYE KKRSTQLLAV CDTCLGSHMP  1320
EDVHCSYCHQ TFRAFNNNFS FYEHEILCKE NRKLDNKDKH TLDSSLPMGI NLLKSFCALV  1380
EVSIPPEALD SMWTEGQRKM WGRKLNASSS ANELLKLLTQ LESAIKRDYL SSNFETTREL  1440
LGSSFQSEND SSTDSVLPWI PQITPAVALR LLELDSSIMY VKQEKVEPPE NREARASYIK  1500
LPSRTTLFIK NKELELKELD QDGPMKEENF ADLSNSKRSS YKRGRGAREQ GSGRKWQRKA  1560
SGSKSDIGKQ SARENNNLSF HLKQQSQRTG QSSGRGRRTV RKRAERRVAN STIVTQMGDM  1620
VKPKSNTVSL RDLDEEWRTE RFGMVETVNP PDSNSTEEES DDNGQGEGYE QGNWELDLNG  1680
ASNGWNREPI EASYEDDDAY EDDNGFEQMV EEESEGDLEM SDASDDVPNE TRNDDGSDSA  1740
DSEDYSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	379	400	KRRKSEERMRKEMERHERERRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-101	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449710.1	0.0	PREDICTED: uncharacterized protein LOC105772803 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D2RDR8	0.0	A0A0D2RDR8_GOSRA; Uncharacterized protein
STRING	Gorai.010G256900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Gorai.010G256900.1
Entrez Gene	105772803

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]