PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G256600.1
Common NameB456_010G256600, LOC105772819
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 229aa    MW: 24767.7 Da    PI: 10.0254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G256600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-202170356
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  Gorai.010G256600.1 21 FRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 70
                        89******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-222078IPR016177DNA-binding domain
PROSITE profilePS5103223.8542077IPR001471AP2/ERF domain
SMARTSM003808.5E-372083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-322177IPR001471AP2/ERF domain
CDDcd000181.71E-182177No hitNo description
PRINTSPR003674.6E-112132IPR001471AP2/ERF domain
PfamPF008472.2E-132169IPR001471AP2/ERF domain
PRINTSPR003674.6E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAPRDKTAAV NGNGSCKEVY FRGVRKRPWG RYAAEIRDPG KKSRVWLGTF DTAEEAARAY  60
DAAAREFRGA KAKTNFPLPF ENFNNGNKIN SKSPSQVSTV ESSSREPTLV IESSPLDLNL  120
GRGTSTGFGS PAFRFPSQKV SPVSGIFTAG GGVPVVASNQ VFYLDAFVRP GLVKGQQYQW  180
MRFDHQDFNT ASFNGGVQSD SDSSSVVDVN PRPLLNIDLN KPALPEIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-201678164ATERF1
3gcc_A2e-201678164ATERF1
5wx9_A2e-2021801575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449737.11e-167PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW499e-41ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A0D2VFC71e-165A0A0D2VFC7_GOSRA; Uncharacterized protein
STRINGGorai.010G256600.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-25erf domain protein 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]