PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G256500.5
Common NameB456_010G256500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 732aa    MW: 80123.8 Da    PI: 7.6973
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G256500.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-07196215525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C+ffar G+C  G++C+F H
  Gorai.010G256500.5 196 ICDFFAR-GWCIKGSSCRFLH 215
                         6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.089191218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6191215IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-5196215IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MLKSGDYKKT RYAGNVVESR GHDGQLGSDL SSTPGNCEPR ILAKTLNVGE GSANFEFSSL  60
PNESLATQKE GLCTNYVASK YSVSGKEPAK ENGIQEYMGN GKDSRNMLER KASQDYPDQH  120
TNGKGHFVVD ESNSLPVGHH SGGVNNGLGF EEKNKQMDVQ TDDDKRKIKS RSAAPQTSAG  180
SLSPSSNSEN KRPALICDFF ARGWCIKGSS CRFLHIKDGG KNPGQLPQED TAAADGKRAV  240
ELDEGFRSAA ERSRSPASAD ALPSSVVNKT GLSSHFFSER ILPLGHDENQ RLHLFHEMNK  300
FPLLQSKDKS LGTAPASQWF SASTDDFGPS KDVRQNGIGQ NLPVSLSDRS TFGNGFLPEY  360
KSSLSGSVIS LGDIYSENQS HHVSTHLVSL PLNFSLSACS LGAQKMLDND RGCHTSKLSS  420
LLQGPFPFSS SKPEKFLVND VASDPLHFSE NRIKISSDDW EPSVPFRPSF FVTSGISSPR  480
GEYDPLRDSI DVSSAGERPL KFSFSNQGPS LLNVADPPTY GNFASRRPLL PERNDDKRTA  540
SCHNGVHENL VSNNCNPSGK DSLTTDANDG TSAVDMQNGT LVKEEISSVA SHVKDISKAN  600
KNDRDHDGRH RRGGSRCKRD LEVDRVREKN EIDVEVEHKA DGDYKESKAM RHFHAALVDL  660
IKQLLKPTWR EGHLSKDAHN TIVKKAVDKV FGSIQPHQLP VTFESVKQYL SSSQPKITRL  720
VEGYIEKYKK S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449732.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X4
TrEMBLA0A0D2UIY30.0A0A0D2UIY3_GOSRA; Uncharacterized protein
STRINGGorai.010G256500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.16e-47C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]