PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G256500.4

Common Name

B456_010G256500, LOC105772814

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 635aa MW: 69734.4 Da PI: 7.9138

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G256500.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	99	118	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffar G+C G++C+F H Gorai.010G256500.4 99 ICDFFAR-GWCIKGSSCRFLH 118 6****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	4.06E-6	94	118	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.089	94	121	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.0E-5	99	118	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MGNGKDSRNM LERKASQDYP DQHTNGKGHF VVDESNSLPV GHHSGGVNNG LGFEEKNKQM 60 DVQTDDDKRK IKSRSAAPQT SAGSLSPSSN SENKRPALIC DFFARGWCIK GSSCRFLHIK 120 DGGKNPGQLP QEDTAAADGK RAVELDEGFR SAAERSRSPA SADALPSSVV NKTGLSSHFF 180 SERILPLGHD ENQRLHLFHE MNKFPLLQSK DKSLGTAPAS QWFSASTDDF GPSKDVRQNG 240 IGQNLPVSLS DRSTFGNGFL PEYKSSLSGS VISLGDIYSE NQSHHVSTHL VSLPLNFSLS 300 ACSLGAQKML DNDRGCHTSK LSSLLQGPFP FSSSKPEKFL VNDVASDPLH FSENRIKISS 360 DDWEPSVPFR PSFFVTSGIS SPRGEYDPLR DSIDVSSAGE RPLKFSFSNQ GPSLLNVADP 420 PTYGNFASRR PLLPERNDDK RTASCHNGVH ENLVSNNCNP SGKDSLTTDA NDGTSAVDMQ 480 NGTLVKEEIS SVASHVKDIS KANKNDRDHD GRHRRGGSRC KRDLEVDRVR EKNEIDVEVE 540 HKADGDYKES KAMRHFHAAL VDLIKQLLKP TWREGHLSKD AHNTIVKKAV DKVFGSIQPH 600 QLPVTFESVK QYLSSSQPKI TRLVEGYIEK YKKS*

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MGNGKDSRNM LERKASQDYP DQHTNGKGHF VVDESNSLPV GHHSGGVNNG LGFEEKNKQM  60
DVQTDDDKRK IKSRSAAPQT SAGSLSPSSN SENKRPALIC DFFARGWCIK GSSCRFLHIK  120
DGGKNPGQLP QEDTAAADGK RAVELDEGFR SAAERSRSPA SADALPSSVV NKTGLSSHFF  180
SERILPLGHD ENQRLHLFHE MNKFPLLQSK DKSLGTAPAS QWFSASTDDF GPSKDVRQNG  240
IGQNLPVSLS DRSTFGNGFL PEYKSSLSGS VISLGDIYSE NQSHHVSTHL VSLPLNFSLS  300
ACSLGAQKML DNDRGCHTSK LSSLLQGPFP FSSSKPEKFL VNDVASDPLH FSENRIKISS  360
DDWEPSVPFR PSFFVTSGIS SPRGEYDPLR DSIDVSSAGE RPLKFSFSNQ GPSLLNVADP  420
PTYGNFASRR PLLPERNDDK RTASCHNGVH ENLVSNNCNP SGKDSLTTDA NDGTSAVDMQ  480
NGTLVKEEIS SVASHVKDIS KANKNDRDHD GRHRRGGSRC KRDLEVDRVR EKNEIDVEVE  540
HKADGDYKES KAMRHFHAAL VDLIKQLLKP TWREGHLSKD AHNTIVKKAV DKVFGSIQPH  600
QLPVTFESVK QYLSSSQPKI TRLVEGYIEK YKKS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449730.1	0.0	PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X2
TrEMBL	A0A0D2VFC0	0.0	A0A0D2VFC0_GOSRA; Uncharacterized protein
STRING	Gorai.010G256500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-47	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G256500.4
Entrez Gene	105772814

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]