PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G256500.2

Common Name

B456_010G256500, LOC105772814

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 773aa MW: 84455 Da PI: 6.3897

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G256500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	237	256	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffar G+C G++C+F H Gorai.010G256500.2 237 ICDFFAR-GWCIKGSSCRFLH 256 6****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.089	232	259	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.23E-6	232	256	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.8E-5	237	256	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MSSSTSAAVP RAGNDDEIRA ASIMEREINS SDMEIDDDDE NEEDLQSSSN RNDAGNVVES 60 RGHDGQLGSD LSSTPGNCEP RILAKTLNVG EGSANFEFSS LPNESLATQK EGLCTNYVAS 120 KYSVSGKEPA KENGIQEYMG NGKDSRNMLE RKASQDYPDQ HTNGKGHFVV DESNSLPVGH 180 HSGGVNNGLG FEEKNKQMDV QTDDDKRKIK SRSAAPQTSA GSLSPSSNSE NKRPALICDF 240 FARGWCIKGS SCRFLHIKDG GKNPGQLPQE DTAAADGKRA VELDEGFRSA AERSRSPASA 300 DALPSSVVNK TGLSSHFFSE RILPLGHDEN QRLHLFHEMN KFPLLQSKDK SLGTAPASQW 360 FSASTDDFGP SKDVRQNGIG QNLPVSLSDR STFGNGFLPE YKSSLSGSVI SLGDIYSENQ 420 SHHVSTHLVS LPLNFSLSAC SLGAQKMLDN DRGCHTSKLS SLLQGPFPFS SSKPEKFLVN 480 DVASDPLHFS ENRIKISSDD WEPSVPFRPS FFVTSGISSP RGEYDPLRDS IDVSSAGERP 540 LKFSFSNQGP SLLNVADPPT YGNFASRRPL LPERNDDKRT ASCHNGVHEN LVSNNCNPSG 600 KDSLTTDAND GTSAVDMQNG TLVKEEISSV ASHVKDISKA NKNDRDHDGR HRRGGSRCKR 660 DLEVDRVREK NEIDVEVEHK ADGDYKESKA MRHFHAALVD LIKQLLKPTW REGHLSKDAH 720 NTIVKKAVDK VFGSIQPHQL PVTFESVKQY LSSSQPKITR LVEGYIEKYK KS*

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MSSSTSAAVP RAGNDDEIRA ASIMEREINS SDMEIDDDDE NEEDLQSSSN RNDAGNVVES  60
RGHDGQLGSD LSSTPGNCEP RILAKTLNVG EGSANFEFSS LPNESLATQK EGLCTNYVAS  120
KYSVSGKEPA KENGIQEYMG NGKDSRNMLE RKASQDYPDQ HTNGKGHFVV DESNSLPVGH  180
HSGGVNNGLG FEEKNKQMDV QTDDDKRKIK SRSAAPQTSA GSLSPSSNSE NKRPALICDF  240
FARGWCIKGS SCRFLHIKDG GKNPGQLPQE DTAAADGKRA VELDEGFRSA AERSRSPASA  300
DALPSSVVNK TGLSSHFFSE RILPLGHDEN QRLHLFHEMN KFPLLQSKDK SLGTAPASQW  360
FSASTDDFGP SKDVRQNGIG QNLPVSLSDR STFGNGFLPE YKSSLSGSVI SLGDIYSENQ  420
SHHVSTHLVS LPLNFSLSAC SLGAQKMLDN DRGCHTSKLS SLLQGPFPFS SSKPEKFLVN  480
DVASDPLHFS ENRIKISSDD WEPSVPFRPS FFVTSGISSP RGEYDPLRDS IDVSSAGERP  540
LKFSFSNQGP SLLNVADPPT YGNFASRRPL LPERNDDKRT ASCHNGVHEN LVSNNCNPSG  600
KDSLTTDAND GTSAVDMQNG TLVKEEISSV ASHVKDISKA NKNDRDHDGR HRRGGSRCKR  660
DLEVDRVREK NEIDVEVEHK ADGDYKESKA MRHFHAALVD LIKQLLKPTW REGHLSKDAH  720
NTIVKKAVDK VFGSIQPHQL PVTFESVKQY LSSSQPKITR LVEGYIEKYK KS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582513	4e-38	JX582513.1 Gossypium hirsutum clone NBRI_GE15352 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449730.1	0.0	PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X2
TrEMBL	A0A0D2VFC0	0.0	A0A0D2VFC0_GOSRA; Uncharacterized protein
STRING	Gorai.010G256500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	8e-47	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G256500.2
Entrez Gene	105772814

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]