PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G248600.2

Common Name

B456_010G248600, LOC105772592

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 409aa MW: 45991.8 Da PI: 6.3349

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G248600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.9	1.8e-25	291	375	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aL+ +r+ +e+++ + +k W+e+s+ m g++rs+k+Ckekwen+nk+++k + kk+ e+s++c+yf++l+ Gorai.010G248600.2 291 RWPDAEVQALVMLRSTLEHKFHITGSKCSIWDEISAGMYNMGYSRSAKKCKEKWENINKYFRKSMGSGKKH-HENSKRCAYFHDLD 375 8****************************************************************9998.78888*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.922	284	348	IPR017877	Myb-like domain
Pfam	PF13837	9.3E-18	290	376	No hit	No description
CDD	cd12203	1.70E-23	290	354	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MELFTGGREA FPQHVTPFPD LTAIMEPAED LMMSDHRPTL PPRKLRPIRY NGRSPASSQA 60 EDHSEFAEAV ELVGDEVCAI NGSSFDYLTP PIKAEVGDVT ATVGGGGSGV EGPPSSEQRG 120 EPSGSSSDSD DDLSATGNEP LKKRKRKSRK KIKLFLEKLV MKVMDKQEQM HKQLMEMIEK 180 REKERLIREE AWKRQEMERV KRDEEARAQE MSRSIALISF IQNALGHEIE IPISTMSCME 240 ENGFKDASED HIQKDTVNPI GPTNRWQEGM MQANGAENHE GGVSCDPNNR RWPDAEVQAL 300 VMLRSTLEHK FHITGSKCSI WDEISAGMYN MGYSRSAKKC KEKWENINKY FRKSMGSGKK 360 HHENSKRCAY FHDLDVLYKN GFGNPVNHIN CIKVDNMDNG ESLKGNEG*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MELFTGGREA FPQHVTPFPD LTAIMEPAED LMMSDHRPTL PPRKLRPIRY NGRSPASSQA  60
EDHSEFAEAV ELVGDEVCAI NGSSFDYLTP PIKAEVGDVT ATVGGGGSGV EGPPSSEQRG  120
EPSGSSSDSD DDLSATGNEP LKKRKRKSRK KIKLFLEKLV MKVMDKQEQM HKQLMEMIEK  180
REKERLIREE AWKRQEMERV KRDEEARAQE MSRSIALISF IQNALGHEIE IPISTMSCME  240
ENGFKDASED HIQKDTVNPI GPTNRWQEGM MQANGAENHE GGVSCDPNNR RWPDAEVQAL  300
VMLRSTLEHK FHITGSKCSI WDEISAGMYN MGYSRSAKKC KEKWENINKY FRKSMGSGKK  360
HHENSKRCAY FHDLDVLYKN GFGNPVNHIN CIKVDNMDNG ESLKGNEG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	146	KKRKRK
2	141	149	KKRKRKSRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00552	DAP	Transfer from AT5G47660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449413.1	0.0	PREDICTED: trihelix transcription factor GT-2 isoform X2
TrEMBL	A0A0D2SYT1	0.0	A0A0D2SYT1_GOSRA; Uncharacterized protein
STRING	Gorai.010G248600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	2e-41	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G248600.2
Entrez Gene	105772592

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]