PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G247200.2 | ||||||||
Common Name | B456_010G247200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 293aa MW: 32265.4 Da PI: 5.6643 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.2e-33 | 37 | 91 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl Gorai.010G247200.2 37 KPRLRWTADLHDRFVDAVTQLGGPNKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 91 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.245 | 34 | 94 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-31 | 34 | 92 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 37 | 92 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.0E-16 | 37 | 93 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-7 | 39 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.0E-8 | 135 | 174 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDMYHPSSRL SSQEEMLNNL NRKAIGEPYL VLTSDPKPRL RWTADLHDRF VDAVTQLGGP 60 NKATPKAIMR TMNVKGLTLF HLKSHLQKYR LGKQSGKDMG EGPKDGMSAS YLLESPGTNN 120 STINLSTADL NEGYEVREAL RAQMEVQSKL HLQLEIRQDA ERKYMAMLER ACKMLADHFI 180 GSGAVTETDN LEFGCKMLRN YSVDPLGFYS SQSAEVENAC DQEEEMPSGL HSQRGDGSTE 240 SCLTSQESPG GLTMEGSPVE GKKKMVNMEA TTGSVIWGDT RVNPQGLTGY GM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-18 | 37 | 93 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-18 | 37 | 93 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-18 | 37 | 93 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-18 | 37 | 93 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012451412.1 | 0.0 | PREDICTED: myb family transcription factor APL-like | ||||
Swissprot | Q94A57 | 7e-57 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A0D2SYN9 | 0.0 | A0A0D2SYN9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G247200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 3e-59 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G247200.2 |
Publications ? help Back to Top | |||
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