PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G243500.4

Common Name

B456_010G243500, LOC105772786

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1746aa MW: 197241 Da PI: 5.1024

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G243500.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.2e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR kekk Gorai.010G243500.4 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-18	14	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.84E-17	18	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.584	25	85	IPR001356	Homeobox domain
SMART	SM00389	6.7E-18	27	89	IPR001356	Homeobox domain
Pfam	PF00046	9.8E-17	29	84	IPR001356	Homeobox domain
CDD	cd00086	2.14E-14	30	84	No hit	No description
PROSITE profile	PS50827	16.662	538	597	IPR018501	DDT domain
SMART	SM00571	3.6E-21	538	597	IPR018501	DDT domain
Pfam	PF02791	7.4E-16	539	594	IPR018501	DDT domain
Pfam	PF05066	1.6E-14	720	787	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.9E-8	939	983	IPR028942	WHIM1 domain
Pfam	PF15613	2.4E-12	1124	1196	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1746 aa Download sequence Send to blast
MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS 120 GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GMEFDPLPPD AFGAIPEPHN RSGHPYESKV YERHDGWSSK VAARAFHEYQ FLPEHSSLRS 240 DAYGLVTQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ GHGSRALVLP QQGIIPSSSH 300 VADDSLAERE SLTNGRNAPS ICHPVLGSED LYMLSAEQTL NNDADPRIDR KRKSDETRIA 360 KEVEAHENRI RKELEKLDHK RRKSEERMRK EMERLERERR KEEERLMREK QREEERTQRE 420 QKREMERRQK FLQKEYLRAE KKRQKEELRR EREEERRRVA REKATARKIA KESMDLLEDE 480 QLELMELAAA RKGIYSIIHL EHDTLQNLES FRDSLSVFPP KSVQLKRPFD IQPWIDSEEN 540 VGNLLMAWRF LITFADILRL WPFTLDEFVQ AFHDYDSRLL GEIHVTLLRS IIKDIEDVAR 600 TPATGLGMNQ YCAANPEGGH LQIVEGAYSW GFDIRNWQHH LNPLTWPEIF RQLAISAGFG 660 PQLKKQKATW TYTGDNDEGK GCADVVSTLR NGSAAENAFA LMREKGLLLP RRSRHRLTPG 720 TVKFAAFHVL SLEGSKGLTV LELADKIQKS GLRDLTTSKT PEASISVALT RDGKLFERIA 780 PSTYCVRPAY RKDPADAEAI LATARRKIRQ FENGFLGGED ADEVERDEVE RDDVERDEDS 840 ECDVDEDPEV DDIATPSNAN KVADYPKNEV NTCLGSKNFH ASADDELDVQ SEFDKDFSPF 900 ASNTVKVDND PSNSGQYVAS EENGTGNPDQ QNIEIDESES GESWIQGLSE GEYSHLSVEE 960 RLNALVALIG IANEGNSIRA VLEDRLEAAN ALKKQMWAEA QLDKSRLKEE CIIKMDFPPV 1020 MGIKTDAQLP NSAVEGSRSP FPVADNKNDE ASPSIPEDQK PLLCSQNVQN DLNSYPAERA 1080 LVLQDASMGP ENFSAQQHGY ASKRSRSQLK SYIAHRAEEM YVYRSLPLGQ DRRRNRYWQF 1140 VASASKNDPC SGQIFVELHD GKWRLIDSEE AFDALLASLD ARGIRESHLR IMLRKIESSF 1200 KENVRRNLHS ARAMGRSGYS ENEASEIDSG PDFTGSFDSP RSGICGLNSD ASGTLPCFKI 1260 QLGRNENERK SAMERYQDFQ RWMWNECYNS STLCAMKYEK KRCTQLLAVC DTCLGSHMPE 1320 DVHCSYCHQT FRALNNNFNF YDHEIRCKEN RKLDNKDKRT LDSSLPMGIN LLKSSCALVE 1380 VSIPPEALGS MWAEGQRKMW GRKLNASSST DELLKLLTQL ESAIKRDYLS SNFETTRELL 1440 GSSLQSENDS STVSVLPWIP QTTPAVALRL LELDSSIMYV KPEKVEPPEN REARASYIKL 1500 PSRTSLFIKN KELELKELDQ DEPMKENFTD LSNSKRSSYK RGRGAREQGS GRKWQRKGSG 1560 SKSDAGKQIV GENNNLSFQL KQQSQRTGQS SGHGRRTVRK RAESRAANST IMARMSDVVK 1620 PKADAVSVRD LDEEWRTERF GMMATVNPPD SNSTEEESDD DGQGEGYGQG NWELDLNGAS 1680 NGWSREPMEA SYEEDDTYED DNGIEQVVEE ESDGDLEMSD ASDDVPNETR NDIGLDSADS 1740 EDYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1746 aa Download sequence Send to blast

MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL  60
SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS  120
GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GMEFDPLPPD AFGAIPEPHN RSGHPYESKV YERHDGWSSK VAARAFHEYQ FLPEHSSLRS  240
DAYGLVTQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ GHGSRALVLP QQGIIPSSSH  300
VADDSLAERE SLTNGRNAPS ICHPVLGSED LYMLSAEQTL NNDADPRIDR KRKSDETRIA  360
KEVEAHENRI RKELEKLDHK RRKSEERMRK EMERLERERR KEEERLMREK QREEERTQRE  420
QKREMERRQK FLQKEYLRAE KKRQKEELRR EREEERRRVA REKATARKIA KESMDLLEDE  480
QLELMELAAA RKGIYSIIHL EHDTLQNLES FRDSLSVFPP KSVQLKRPFD IQPWIDSEEN  540
VGNLLMAWRF LITFADILRL WPFTLDEFVQ AFHDYDSRLL GEIHVTLLRS IIKDIEDVAR  600
TPATGLGMNQ YCAANPEGGH LQIVEGAYSW GFDIRNWQHH LNPLTWPEIF RQLAISAGFG  660
PQLKKQKATW TYTGDNDEGK GCADVVSTLR NGSAAENAFA LMREKGLLLP RRSRHRLTPG  720
TVKFAAFHVL SLEGSKGLTV LELADKIQKS GLRDLTTSKT PEASISVALT RDGKLFERIA  780
PSTYCVRPAY RKDPADAEAI LATARRKIRQ FENGFLGGED ADEVERDEVE RDDVERDEDS  840
ECDVDEDPEV DDIATPSNAN KVADYPKNEV NTCLGSKNFH ASADDELDVQ SEFDKDFSPF  900
ASNTVKVDND PSNSGQYVAS EENGTGNPDQ QNIEIDESES GESWIQGLSE GEYSHLSVEE  960
RLNALVALIG IANEGNSIRA VLEDRLEAAN ALKKQMWAEA QLDKSRLKEE CIIKMDFPPV  1020
MGIKTDAQLP NSAVEGSRSP FPVADNKNDE ASPSIPEDQK PLLCSQNVQN DLNSYPAERA  1080
LVLQDASMGP ENFSAQQHGY ASKRSRSQLK SYIAHRAEEM YVYRSLPLGQ DRRRNRYWQF  1140
VASASKNDPC SGQIFVELHD GKWRLIDSEE AFDALLASLD ARGIRESHLR IMLRKIESSF  1200
KENVRRNLHS ARAMGRSGYS ENEASEIDSG PDFTGSFDSP RSGICGLNSD ASGTLPCFKI  1260
QLGRNENERK SAMERYQDFQ RWMWNECYNS STLCAMKYEK KRCTQLLAVC DTCLGSHMPE  1320
DVHCSYCHQT FRALNNNFNF YDHEIRCKEN RKLDNKDKRT LDSSLPMGIN LLKSSCALVE  1380
VSIPPEALGS MWAEGQRKMW GRKLNASSST DELLKLLTQL ESAIKRDYLS SNFETTRELL  1440
GSSLQSENDS STVSVLPWIP QTTPAVALRL LELDSSIMYV KPEKVEPPEN REARASYIKL  1500
PSRTSLFIKN KELELKELDQ DEPMKENFTD LSNSKRSSYK RGRGAREQGS GRKWQRKGSG  1560
SKSDAGKQIV GENNNLSFQL KQQSQRTGQS SGHGRRTVRK RAESRAANST IMARMSDVVK  1620
PKADAVSVRD LDEEWRTERF GMMATVNPPD SNSTEEESDD DGQGEGYGQG NWELDLNGAS  1680
NGWSREPMEA SYEEDDTYED DNGIEQVVEE ESDGDLEMSD ASDDVPNETR NDIGLDSADS  1740
EDYSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	379	400	KRRKSEERMRKEMERLERERRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-103	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449689.1	0.0	PREDICTED: uncharacterized protein LOC105772786 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D2VEP7	0.0	A0A0D2VEP7_GOSRA; Uncharacterized protein
STRING	Gorai.010G243500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Gorai.010G243500.4
Entrez Gene	105772786

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]