PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G243500.3

Common Name

B456_010G243500, LOC105772786

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1719aa MW: 194546 Da PI: 5.0827

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G243500.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4.2e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR kekk Gorai.010G243500.3 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-18	14	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.84E-17	18	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.584	25	85	IPR001356	Homeobox domain
SMART	SM00389	6.7E-18	27	89	IPR001356	Homeobox domain
Pfam	PF00046	9.6E-17	29	84	IPR001356	Homeobox domain
CDD	cd00086	2.52E-14	30	84	No hit	No description
PROSITE profile	PS50827	16.662	511	570	IPR018501	DDT domain
SMART	SM00571	3.6E-21	511	570	IPR018501	DDT domain
Pfam	PF02791	7.3E-16	512	567	IPR018501	DDT domain
Pfam	PF05066	1.5E-14	693	760	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.9E-8	912	956	IPR028942	WHIM1 domain
Pfam	PF15613	2.3E-12	1097	1169	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1719 aa Download sequence Send to blast
MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS 120 GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GMEFDPLPPD AFGAIPEPHN RSGHPYESKV YERHDGWSSK VAARAFHEYQ FLPEHSSLRS 240 DAYGLVTQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ ERESLTNGRN APSICHPVLG 300 SEDLYMLSAE QTLNNDADPR IDRKRKSDET RIAKEVEAHE NRIRKELEKL DHKRRKSEER 360 MRKEMERLER ERRKEEERLM REKQREEERT QREQKREMER RQKFLQKEYL RAEKKRQKEE 420 LRREREEERR RVAREKATAR KIAKESMDLL EDEQLELMEL AAARKGIYSI IHLEHDTLQN 480 LESFRDSLSV FPPKSVQLKR PFDIQPWIDS EENVGNLLMA WRFLITFADI LRLWPFTLDE 540 FVQAFHDYDS RLLGEIHVTL LRSIIKDIED VARTPATGLG MNQYCAANPE GGHLQIVEGA 600 YSWGFDIRNW QHHLNPLTWP EIFRQLAISA GFGPQLKKQK ATWTYTGDND EGKGCADVVS 660 TLRNGSAAEN AFALMREKGL LLPRRSRHRL TPGTVKFAAF HVLSLEGSKG LTVLELADKI 720 QKSGLRDLTT SKTPEASISV ALTRDGKLFE RIAPSTYCVR PAYRKDPADA EAILATARRK 780 IRQFENGFLG GEDADEVERD EVERDDVERD EDSECDVDED PEVDDIATPS NANKVADYPK 840 NEVNTCLGSK NFHASADDEL DVQSEFDKDF SPFASNTVKV DNDPSNSGQY VASEENGTGN 900 PDQQNIEIDE SESGESWIQG LSEGEYSHLS VEERLNALVA LIGIANEGNS IRAVLEDRLE 960 AANALKKQMW AEAQLDKSRL KEECIIKMDF PPVMGIKTDA QLPNSAVEGS RSPFPVADNK 1020 NDEASPSIPE DQKPLLCSQN VQNDLNSYPA ERALVLQDAS MGPENFSAQQ HGYASKRSRS 1080 QLKSYIAHRA EEMYVYRSLP LGQDRRRNRY WQFVASASKN DPCSGQIFVE LHDGKWRLID 1140 SEEAFDALLA SLDARGIRES HLRIMLRKIE SSFKENVRRN LHSARAMGRS GYSENEASEI 1200 DSGPDFTGSF DSPRSGICGL NSDASGTLPC FKIQLGRNEN ERKSAMERYQ DFQRWMWNEC 1260 YNSSTLCAMK YEKKRCTQLL AVCDTCLGSH MPEDVHCSYC HQTFRALNNN FNFYDHEIRC 1320 KENRKLDNKD KRTLDSSLPM GINLLKSSCA LVEVSIPPEA LGSMWAEGQR KMWGRKLNAS 1380 SSTDELLKLL TQLESAIKRD YLSSNFETTR ELLGSSLQSE NDSSTVSVLP WIPQTTPAVA 1440 LRLLELDSSI MYVKPEKVEP PENREARASY IKLPSRTSLF IKNKELELKE LDQDEPMKEN 1500 FTDLSNSKRS SYKRGRGARE QGSGRKWQRK GSGSKSDAGK QIVGENNNLS FQLKQQSQRT 1560 GQSSGHGRRT VRKRAESRAA NSTIMARMSD VVKPKADAVS VRDLDEEWRT ERFGMMATVN 1620 PPDSNSTEEE SDDDGQGEGY GQGNWELDLN GASNGWSREP MEASYEEDDT YEDDNGIEQV 1680 VEEESDGDLE MSDASDDVPN ETRNDIGLDS ADSEDYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1719 aa Download sequence Send to blast

MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL  60
SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS  120
GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GMEFDPLPPD AFGAIPEPHN RSGHPYESKV YERHDGWSSK VAARAFHEYQ FLPEHSSLRS  240
DAYGLVTQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ ERESLTNGRN APSICHPVLG  300
SEDLYMLSAE QTLNNDADPR IDRKRKSDET RIAKEVEAHE NRIRKELEKL DHKRRKSEER  360
MRKEMERLER ERRKEEERLM REKQREEERT QREQKREMER RQKFLQKEYL RAEKKRQKEE  420
LRREREEERR RVAREKATAR KIAKESMDLL EDEQLELMEL AAARKGIYSI IHLEHDTLQN  480
LESFRDSLSV FPPKSVQLKR PFDIQPWIDS EENVGNLLMA WRFLITFADI LRLWPFTLDE  540
FVQAFHDYDS RLLGEIHVTL LRSIIKDIED VARTPATGLG MNQYCAANPE GGHLQIVEGA  600
YSWGFDIRNW QHHLNPLTWP EIFRQLAISA GFGPQLKKQK ATWTYTGDND EGKGCADVVS  660
TLRNGSAAEN AFALMREKGL LLPRRSRHRL TPGTVKFAAF HVLSLEGSKG LTVLELADKI  720
QKSGLRDLTT SKTPEASISV ALTRDGKLFE RIAPSTYCVR PAYRKDPADA EAILATARRK  780
IRQFENGFLG GEDADEVERD EVERDDVERD EDSECDVDED PEVDDIATPS NANKVADYPK  840
NEVNTCLGSK NFHASADDEL DVQSEFDKDF SPFASNTVKV DNDPSNSGQY VASEENGTGN  900
PDQQNIEIDE SESGESWIQG LSEGEYSHLS VEERLNALVA LIGIANEGNS IRAVLEDRLE  960
AANALKKQMW AEAQLDKSRL KEECIIKMDF PPVMGIKTDA QLPNSAVEGS RSPFPVADNK  1020
NDEASPSIPE DQKPLLCSQN VQNDLNSYPA ERALVLQDAS MGPENFSAQQ HGYASKRSRS  1080
QLKSYIAHRA EEMYVYRSLP LGQDRRRNRY WQFVASASKN DPCSGQIFVE LHDGKWRLID  1140
SEEAFDALLA SLDARGIRES HLRIMLRKIE SSFKENVRRN LHSARAMGRS GYSENEASEI  1200
DSGPDFTGSF DSPRSGICGL NSDASGTLPC FKIQLGRNEN ERKSAMERYQ DFQRWMWNEC  1260
YNSSTLCAMK YEKKRCTQLL AVCDTCLGSH MPEDVHCSYC HQTFRALNNN FNFYDHEIRC  1320
KENRKLDNKD KRTLDSSLPM GINLLKSSCA LVEVSIPPEA LGSMWAEGQR KMWGRKLNAS  1380
SSTDELLKLL TQLESAIKRD YLSSNFETTR ELLGSSLQSE NDSSTVSVLP WIPQTTPAVA  1440
LRLLELDSSI MYVKPEKVEP PENREARASY IKLPSRTSLF IKNKELELKE LDQDEPMKEN  1500
FTDLSNSKRS SYKRGRGARE QGSGRKWQRK GSGSKSDAGK QIVGENNNLS FQLKQQSQRT  1560
GQSSGHGRRT VRKRAESRAA NSTIMARMSD VVKPKADAVS VRDLDEEWRT ERFGMMATVN  1620
PPDSNSTEEE SDDDGQGEGY GQGNWELDLN GASNGWSREP MEASYEEDDT YEDDNGIEQV  1680
VEEESDGDLE MSDASDDVPN ETRNDIGLDS ADSEDYSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	352	373	KRRKSEERMRKEMERLERERRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-103	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449691.1	0.0	PREDICTED: uncharacterized protein LOC105772786 isoform X4
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D2SYD8	0.0	A0A0D2SYD8_GOSRA; Uncharacterized protein
STRING	Gorai.010G243500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Gorai.010G243500.3
Entrez Gene	105772786

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]